1. 3D - Protein Structure Prediction
  2. Targets for 3-months
  3. Server Naive AlphaFoldDB 100

CAMEO-3D: Server Pairwise Comparison 3-months Performance (2022-01-21 - 2022-04-16)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

Naive AlphaFoldDB 100 - Pairwise Comparison on common targets - dataset: 3-months [2022-01-21 - 2022-04-16]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
Naive AlphaFoldDB 100 - Reference
PaFold -88 13 0 0 -72:15:44 00:00:58 6.86 78.21 4.94 76.47 7.27 82.95 - - - - server101 False
HeliXonAI -110 17 0 0 -74:17:18 00:01:06 -2.85 80.36 -3.04 76.56 0.64 91.66 - - - - server104 False
RocketX -146 21 0 0 -30:31:22 00:00:57 19.16 79.56 11.28 76.23 24.83 87.92 - - - - server106 False
Robetta -85 13 0 0 -11:17:43 00:00:58 6.35 78.21 4.43 76.47 4.71 82.95 - - - - server11 False
Phyre2 -143 20 0 0 -01:03:56 00:00:58 31.03 79.61 24.94 76.02 39.23 87.92 - - - - server17 False
RoseTTAFold -140 20 0 0 -09:47:10 00:00:58 6.69 79.18 3.94 76.00 16.29 87.92 - - - - server19 False
SWISS-MODEL -145 19 0 0 -00:02:58 00:00:48 21.59 79.77 17.98 75.99 38.72 87.92 - - - - server20 False
RaptorX -41 10 0 0 -11:46:48 00:00:44 16.85 80.57 10.98 77.92 3.79 82.95 - - - - server22 False
SPARKS-X 42 0 0 0 - - - - - - - - - - - - server30 True
IntFOLD3-TS -138 21 0 0 -37:35:31 00:00:58 19.88 79.56 14.58 76.23 30.05 87.92 - - - - server33 False
NaiveBLAST -126 16 0 0 --1:59:15 00:01:02 32.58 79.18 28.39 75.36 60.77 91.66 - - - - server36 False
IntFOLD4-TS -136 19 0 0 -47:09:20 00:00:57 16.05 78.39 11.98 75.39 30.61 87.92 - - - - server58 False
PRIMO -87 17 0 0 -02:15:17 00:00:49 38.60 79.22 31.21 76.07 60.51 87.92 - - - - server61 False
PRIMO_BST_3D -53 13 0 0 -02:30:51 00:00:47 40.76 76.99 33.87 73.83 61.47 87.92 - - - - server62 False
PRIMO_HHS_3D 11 6 0 0 -02:54:50 00:00:41 33.72 70.67 30.37 71.24 20.90 76.68 - - - - server63 True
PRIMO_HHS_CL -1 9 0 0 -02:46:21 00:00:35 25.33 76.14 19.05 75.55 18.93 76.68 - - - - server64 True
PRIMO_BST_CL -82 16 0 0 -02:19:13 00:00:40 38.89 78.57 31.56 75.70 83.84 87.48 - - - - server65 False
IntFOLD5-TS -147 21 0 0 -25:59:00 00:00:57 19.09 79.56 12.48 76.23 26.16 87.92 - - - - server75 False
IntFOLD6-TS -141 20 0 0 -22:18:48 00:00:56 19.18 80.55 13.34 76.77 37.43 87.92 - - - - server90 False
pureAF2_orig -143 20 0 0 -24:43:43 00:00:52 -2.53 78.92 -2.84 75.78 0.28 86.94 - - - - server96 False
pureAF2_notemp -148 21 0 0 -29:44:28 00:00:57 -1.99 79.56 -2.98 76.23 -0.55 87.92 - - - - server97 False
ZlxFold -118 17 0 0 -62:48:47 00:00:49 -2.56 77.43 -3.03 74.85 -0.28 86.94 - - - - server98 False
BestSingleStructuralTemplate -136 20 0 0 -03:15:51 00:00:58 13.34 79.61 9.88 76.02 23.08 87.92 - - - - server999 False
Naive AlphaFoldDB 90 -22 21 0 0 --1:59:56 00:00:57 0.04 79.56 0.09 76.23 0.19 87.92 - - - - server99 False
Naive AlphaFoldDB 100 - model_1 per target comparison with the best: 3-months - [2022-01-21 - 2022-04-16]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best