1. 3D - Protein Structure Prediction
  2. Targets for 1-month
  3. Server Naive AlphaFoldDB 100

CAMEO-3D: Server Pairwise Comparison 1-month Performance (2022-03-25 - 2022-04-16)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

Naive AlphaFoldDB 100 - Pairwise Comparison on common targets - dataset: 1-month [2022-03-25 - 2022-04-16]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
Naive AlphaFoldDB 100 - Reference
PaFold 14 0 0 0 - - - - - - - - - - - - server101 True
HeliXonAI -46 14 0 0 -70:53:28 00:00:55 -6.22 81.98 -5.53 76.58 0.22 89.08 - - - - server104 False
RocketX -46 14 0 0 -28:53:37 00:00:55 14.74 81.98 9.75 76.58 23.81 89.08 - - - - server106 False
OpenComplex -46 14 0 0 -69:01:11 00:00:55 -1.84 81.98 -2.55 76.58 7.44 89.08 - - - - server111 False
SADA -46 14 0 0 -76:42:15 00:00:55 -6.23 81.98 -5.68 76.58 -0.25 89.08 - - - - server112 False
IntFOLD7 -41 14 0 0 -23:00:39 00:00:55 -3.22 81.98 -3.28 76.58 0.35 89.08 - - - - server113 False
Robetta 14 0 0 0 - - - - - - - - - - - - server11 True
ZJUT-DeepAssembly -44 14 0 0 -72:04:44 00:00:55 -5.90 81.98 -5.31 76.58 3.03 89.08 - - - - server120 False
MultiDFold -31 9 0 0 -80:44:40 00:00:16 20.32 78.81 8.85 73.91 23.21 88.64 - - - - server121 False
MEGA-EvoGen -46 14 0 0 -68:57:17 00:00:55 -5.43 81.98 -5.43 76.58 0.57 89.08 - - - - server122 False
AIRFold -30 11 0 0 -68:50:34 00:01:07 -7.54 81.36 -6.79 76.23 1.77 90.58 - - - - server127 False
Phyre2 -45 14 0 0 -01:02:15 00:00:55 28.01 81.98 22.52 76.58 35.56 89.08 - - - - server17 False
RoseTTAFold -42 13 0 0 -07:11:15 00:00:58 5.14 81.57 2.80 76.24 20.68 89.08 - - - - server19 False
SWISS-MODEL -45 14 0 0 -00:02:53 00:00:48 18.44 81.98 15.63 76.58 26.04 89.08 - - - - server20 False
RaptorX -5 1 0 0 -04:33:27 00:00:16 10.96 81.38 7.22 75.24 - - - - - - server22 False
SPARKS-X 14 0 0 0 - - - - - - - - - - - - server30 True
IntFOLD3-TS -37 13 0 0 -40:02:26 00:00:58 16.95 81.13 12.45 75.74 22.90 87.91 - - - - server33 False
NaiveBLAST -38 12 0 0 --1:59:16 00:01:01 23.68 80.73 21.56 75.42 35.79 89.08 - - - - server36 False
IntFOLD4-TS -41 12 0 0 -47:28:49 00:00:54 10.74 80.52 8.29 75.31 20.35 89.08 - - - - server58 False
PRIMO -23 10 0 0 -02:01:33 00:01:12 37.93 80.19 31.83 75.11 59.78 89.51 - - - - server61 False
PRIMO_BST_3D -15 8 0 0 -02:32:43 00:00:59 39.68 78.49 33.60 73.28 59.83 89.51 - - - - server62 False
PRIMO_HHS_3D 7 1 0 0 -01:45:49 00:01:21 55.27 85.16 51.05 79.80 - - - - - - server63 True
PRIMO_HHS_CL 5 3 0 0 -03:23:10 00:00:40 58.26 88.48 45.12 82.76 58.90 93.79 - - - - server64 True
PRIMO_BST_CL -23 11 0 0 -02:38:16 00:01:07 35.14 81.36 29.62 76.23 45.01 90.58 - - - - server65 False
IntFOLD5-TS -46 14 0 0 -28:12:59 00:00:55 14.12 81.98 10.35 76.58 17.51 89.08 - - - - server75 False
IntFOLD6-TS -40 14 0 0 -24:42:29 00:00:55 13.04 81.98 9.69 76.58 15.44 89.08 - - - - server90 False
pureAF2_orig -41 12 0 0 -20:32:19 00:00:40 -7.29 81.08 -6.76 75.67 -0.33 88.64 - - - - server96 False
pureAF2_notemp -46 14 0 0 -24:56:33 00:00:55 -6.24 81.98 -5.73 76.58 0.86 89.08 - - - - server97 False
ZlxFold -16 7 0 0 -61:19:17 00:00:16 -6.30 81.22 -6.67 75.53 -0.32 88.64 - - - - server98 False
BestSingleStructuralTemplate -42 14 0 0 -03:20:12 00:00:55 10.19 81.98 7.18 76.58 16.01 89.08 - - - - server999 False
Naive AlphaFoldDB 90 -8 14 0 0 --1:59:25 00:00:55 0.03 81.98 0.06 76.58 0.53 89.08 - - - - server99 False
Naive AlphaFoldDB 100 - model_1 per target comparison with the best: 1-month - [2022-03-25 - 2022-04-16]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best