1. 3D - Protein Structure Prediction
  2. Targets for 6-months
  3. Server SWISS-MODEL

CAMEO-3D: Server Pairwise Comparison 6-months Performance (2021-10-22 - 2022-04-16)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

SWISS-MODEL - Pairwise Comparison on common targets - dataset: 6-months [2021-10-22 - 2022-04-16]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
SWISS-MODEL - Reference
Naive AlphaFoldDB 100 298 35 101 0 --1:53:54 00:06:38 -21.90 59.75 -18.25 59.58 -27.45 55.81 - - - - server100 True
PaFold 57 168 101 0 -67:48:36 00:06:13 -12.06 62.48 -10.61 61.85 -7.02 58.96 - - - - server101 False
Robetta 85 154 101 0 -14:55:55 00:05:33 -9.31 62.50 -8.59 61.91 -4.42 57.73 - - - - server11 False
Phyre2 2 193 101 0 -01:38:09 00:06:06 9.01 60.61 6.15 60.23 3.85 56.82 - - - - server17 False
RoseTTAFold 7 191 101 0 -11:15:21 00:06:07 -12.23 60.68 -11.02 60.33 -7.29 57.17 - - - - server19 False
RaptorX 191 95 101 0 -12:01:18 00:06:17 -1.47 61.55 -2.91 60.89 0.09 59.33 - - - - server22 False
SPARKS-X 376 0 101 0 - - - - - - - - - - - - server30 True
IntFOLD3-TS 42 173 101 0 -41:45:37 00:06:17 -0.77 60.34 -1.04 60.03 -1.09 56.83 - - - - server33 False
NaiveBLAST 56 174 101 0 --1:54:14 00:06:23 12.24 61.64 11.91 61.10 7.02 56.87 - - - - server36 False
IntFOLD4-TS 55 167 101 0 -55:36:09 00:06:04 -2.59 60.41 -2.69 60.11 -4.33 58.20 - - - - server58 False
PRIMO 135 125 101 0 -02:57:47 00:05:40 12.03 58.56 8.75 58.48 8.37 55.06 - - - - server61 False
PRIMO_BST_3D 184 108 101 0 -03:01:59 00:04:54 14.73 58.44 11.27 58.47 8.54 52.24 - - - - server62 False
PRIMO_HHS_3D 309 36 101 0 -03:16:08 00:02:52 13.58 58.22 10.77 58.81 7.26 59.56 - - - - server63 True
PRIMO_HHS_CL 297 39 101 0 -03:21:36 00:02:41 8.27 58.60 5.46 58.88 9.60 66.53 - - - - server64 True
PRIMO_BST_CL 149 118 101 0 -02:57:34 00:05:37 12.26 59.42 8.98 59.32 9.53 54.72 - - - - server65 False
IntFOLD5-TS 69 160 101 0 -34:28:34 00:05:38 -3.81 60.19 -3.86 59.94 -6.00 55.91 - - - - server75 False
IntFOLD6-TS 38 176 101 0 -31:16:53 00:06:11 -4.39 60.25 -4.22 59.95 -6.46 56.66 - - - - server90 False
pureAF2_orig 5 194 101 0 -37:35:52 00:06:04 -24.35 60.60 -20.41 60.26 -20.50 57.93 - - - - server96 False
pureAF2_notemp 1 195 101 0 -42:35:23 00:06:05 -24.37 60.45 -20.47 60.13 -20.57 58.26 - - - - server97 False
ZlxFold 30 183 101 0 -62:28:09 00:06:02 -21.99 61.79 -18.43 61.28 -18.06 59.66 - - - - server98 False
BestSingleStructuralTemplate 23 184 101 0 -04:17:45 00:05:43 -6.91 60.44 -6.62 60.12 -5.44 58.12 - - - - server999 False
Naive AlphaFoldDB 90 260 56 101 0 --1:54:47 00:06:15 -17.56 61.25 -14.31 60.83 -20.49 60.26 - - - - server99 False
SWISS-MODEL - model_1 per target comparison with the best: 6-months - [2021-10-22 - 2022-04-16]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best