1. 3D - Protein Structure Prediction
  2. Targets for 3-months
  3. Server SWISS-MODEL

CAMEO-3D: Server Pairwise Comparison 3-months Performance (2022-01-21 - 2022-04-16)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

SWISS-MODEL - Pairwise Comparison on common targets - dataset: 3-months [2022-01-21 - 2022-04-16]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
SWISS-MODEL - Reference
Naive AlphaFoldDB 100 145 40 52 0 --1:57:02 00:03:46 -15.46 67.32 -13.54 65.01 -14.72 71.20 - - - - server100 True
PaFold 57 128 52 0 -72:37:27 00:04:55 -10.40 68.24 -9.25 66.23 -8.14 68.01 - - - - server101 False
HeliXonAI 35 150 52 0 -74:28:19 00:04:46 -20.50 65.91 -17.52 64.30 -18.64 64.35 - - - - server104 False
RocketX -1 185 52 0 -31:58:10 00:05:08 7.11 67.00 2.57 65.20 7.88 66.69 - - - - server106 False
Robetta 60 125 52 0 -15:59:36 00:04:50 -5.73 68.44 -5.70 66.46 -3.71 67.75 - - - - server11 False
Phyre2 2 183 52 0 -01:28:32 00:05:06 8.70 67.27 6.50 65.39 5.30 66.08 - - - - server17 False
RoseTTAFold 5 179 52 0 -14:39:29 00:05:06 -7.53 67.10 -7.27 65.27 -2.14 67.29 - - - - server19 False
RaptorX 104 81 52 0 -10:48:49 00:04:37 -0.05 68.47 -1.50 66.56 2.65 70.12 - - - - server22 False
SPARKS-X 187 0 52 0 - - - - - - - - - - - - server30 True
IntFOLD3-TS 7 177 52 0 -41:57:05 00:05:04 -0.13 66.84 -0.40 65.04 -1.73 66.19 - - - - server33 False
NaiveBLAST 19 167 52 0 --1:55:02 00:05:21 10.21 69.13 10.20 66.94 7.06 67.74 - - - - server36 False
IntFOLD4-TS 9 175 52 0 -53:14:27 00:05:03 -1.55 67.07 -1.99 65.24 -2.37 66.25 - - - - server58 False
PRIMO 58 127 52 0 -02:52:12 00:04:49 10.58 66.21 7.91 64.51 10.99 63.23 - - - - server61 False
PRIMO_BST_3D 92 94 52 0 -02:51:04 00:04:24 13.40 65.06 10.43 63.73 14.75 60.80 - - - - server62 False
PRIMO_HHS_3D 156 31 52 0 -03:05:05 00:02:26 11.16 65.46 9.16 64.71 3.68 68.80 - - - - server63 True
PRIMO_HHS_CL 144 41 52 0 -03:16:27 00:02:26 6.55 63.58 4.16 62.63 12.34 72.09 - - - - server64 True
PRIMO_BST_CL 63 122 52 0 -02:49:39 00:04:37 10.35 66.23 7.81 64.58 13.65 66.24 - - - - server65 False
IntFOLD5-TS -2 186 52 0 -30:06:10 00:05:08 -2.17 67.08 -2.65 65.23 -3.91 66.53 - - - - server75 False
IntFOLD6-TS 4 180 52 0 -26:08:46 00:05:08 -2.46 66.71 -3.02 64.92 -4.29 65.75 - - - - server90 False
pureAF2_orig 2 182 52 0 -26:06:44 00:05:03 -19.47 67.01 -16.61 65.21 -17.60 66.42 - - - - server96 False
pureAF2_notemp -3 187 52 0 -30:02:36 00:05:07 -19.01 67.01 -16.34 65.19 -16.62 66.53 - - - - server97 False
ZlxFold 27 158 52 0 -62:57:05 00:04:49 -17.67 68.07 -15.09 66.03 -14.73 69.18 - - - - server98 False
BestSingleStructuralTemplate 9 176 52 0 -04:10:54 00:05:00 -6.46 67.05 -5.93 65.22 -7.85 67.22 - - - - server999 False
Naive AlphaFoldDB 90 123 62 52 0 --1:57:36 00:04:04 -12.75 69.02 -10.52 66.69 -14.20 73.15 - - - - server99 False
SWISS-MODEL - model_1 per target comparison with the best: 3-months - [2022-01-21 - 2022-04-16]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best