1. 3D - Protein Structure Prediction
  2. Targets for 3-months
  3. Server SWISS-MODEL

CAMEO-3D: Server Pairwise Comparison 3-months Performance (2022-01-21 - 2022-04-16)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

SWISS-MODEL - Pairwise Comparison on common targets - dataset: 3-months [2022-01-21 - 2022-04-16]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
SWISS-MODEL - Reference
Naive AlphaFoldDB 100 145 19 52 0 --1:57:02 00:03:46 -21.59 58.18 -17.98 58.01 -38.72 49.20 - - - - server100 True
PaFold 57 76 52 0 -72:37:27 00:04:55 -13.87 63.39 -11.95 62.52 -11.28 63.34 - - - - server101 False
HeliXonAI 35 82 52 0 -74:28:19 00:04:46 -26.88 57.64 -22.82 57.59 -27.60 54.43 - - - - server104 False
RocketX -1 104 52 0 -31:58:10 00:05:08 2.53 59.54 -1.76 59.26 3.47 59.78 - - - - server106 False
Robetta 60 73 52 0 -15:59:36 00:04:50 -8.18 63.53 -7.70 62.76 -5.06 62.74 - - - - server11 False
Phyre2 2 101 52 0 -01:28:32 00:05:06 9.86 59.60 7.17 59.26 6.10 58.30 - - - - server17 False
RoseTTAFold 5 101 52 0 -14:39:29 00:05:06 -12.50 59.66 -11.48 59.42 -7.71 58.93 - - - - server19 False
RaptorX 104 49 52 0 -10:48:49 00:04:37 -0.42 62.32 -2.34 61.71 -0.00 60.12 - - - - server22 False
SPARKS-X 187 0 52 0 - - - - - - - - - - - - server30 True
IntFOLD3-TS 7 100 52 0 -41:57:05 00:05:04 -1.46 59.65 -1.79 59.29 -1.58 59.60 - - - - server33 False
NaiveBLAST 19 94 52 0 --1:55:02 00:05:21 12.40 61.09 12.32 60.47 9.28 59.62 - - - - server36 False
IntFOLD4-TS 9 98 52 0 -53:14:27 00:05:03 -2.95 60.01 -3.11 59.58 -4.77 58.95 - - - - server58 False
PRIMO 58 71 52 0 -02:52:12 00:04:49 13.41 58.12 9.74 57.93 10.20 57.59 - - - - server61 False
PRIMO_BST_3D 92 59 52 0 -02:51:04 00:04:24 15.55 57.72 11.91 57.78 12.76 55.08 - - - - server62 False
PRIMO_HHS_3D 156 18 52 0 -03:05:05 00:02:26 13.76 57.60 11.38 58.49 5.95 58.59 - - - - server63 True
PRIMO_HHS_CL 144 22 52 0 -03:16:27 00:02:26 6.54 57.33 4.54 58.14 12.11 72.62 - - - - server64 True
PRIMO_BST_CL 63 64 52 0 -02:49:39 00:04:37 13.21 58.75 9.73 58.62 14.31 58.48 - - - - server65 False
IntFOLD5-TS -2 104 52 0 -30:06:10 00:05:08 -3.95 59.48 -4.14 59.16 -7.00 59.49 - - - - server75 False
IntFOLD6-TS 4 103 52 0 -26:08:46 00:05:08 -4.23 59.63 -4.42 59.28 -6.40 58.59 - - - - server90 False
pureAF2_orig 2 103 52 0 -26:06:44 00:05:03 -24.60 59.68 -20.77 59.34 -24.34 58.91 - - - - server96 False
pureAF2_notemp -3 105 52 0 -30:02:36 00:05:07 -24.77 59.43 -20.94 59.14 -24.16 59.49 - - - - server97 False
ZlxFold 27 92 52 0 -62:57:05 00:04:49 -21.53 61.93 -18.24 61.26 -20.22 62.60 - - - - server98 False
BestSingleStructuralTemplate 9 100 52 0 -04:10:54 00:05:00 -7.80 59.59 -7.40 59.23 -8.83 60.60 - - - - server999 False
Naive AlphaFoldDB 90 123 32 52 0 --1:57:36 00:04:04 -18.78 60.31 -15.31 60.02 -23.37 63.00 - - - - server99 False
SWISS-MODEL - model_1 per target comparison with the best: 3-months - [2022-01-21 - 2022-04-16]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best