1. 3D - Protein Structure Prediction
  2. Targets for 1-year
  3. Server NaiveBLAST

CAMEO-3D: Server Pairwise Comparison 1-year Performance (2021-04-23 - 2022-04-16)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

NaiveBLAST - Pairwise Comparison on common targets - dataset: 1-year [2021-04-23 - 2022-04-16]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
NaiveBLAST - Reference
Robetta -10 319 0 0 -13:03:51 00:00:33 -19.26 53.47 -18.60 52.68 -8.60 56.96 - - - - server11 False
Phyre2 -94 354 0 0 -01:40:55 00:00:32 -1.76 52.38 -5.86 51.70 -2.11 56.08 - - - - server17 False
RoseTTAFold -49 334 0 0 -09:47:34 00:00:32 -22.16 52.02 -20.79 51.44 -10.82 56.22 - - - - server19 False
SWISS-MODEL -96 358 0 0 -00:21:10 00:00:31 -11.22 52.30 -10.94 51.63 -4.89 56.31 - - - - server20 False
RaptorX 153 235 0 0 -15:53:49 00:00:36 -11.90 54.44 -12.31 53.60 -2.90 60.40 - - - - server22 False
SPARKS-X 369 126 0 0 -14:42:07 00:00:25 -3.79 55.79 -6.91 54.56 -0.79 66.81 - - - - server30 False
IntFOLD3-TS -57 335 0 0 -40:56:39 00:00:32 -11.94 52.31 -11.49 51.60 -6.75 56.37 - - - - server33 False
IntFOLD4-TS 10 307 0 0 -57:31:42 00:00:31 -13.61 51.86 -13.33 51.20 -9.16 56.56 - - - - server58 False
PRIMO 309 168 0 0 -02:58:54 00:00:37 -2.63 48.59 -4.11 48.58 2.14 50.66 - - - - server61 False
PRIMO_BST_3D 372 146 0 0 -03:06:30 00:00:41 -0.29 48.53 -2.26 48.57 2.33 47.52 - - - - server62 False
PRIMO_HHS_3D 558 45 0 0 -03:17:27 00:00:16 -2.36 46.19 -3.47 47.84 0.94 52.55 - - - - server63 True
PRIMO_HHS_CL 539 45 0 0 -03:18:39 00:00:18 -8.47 46.22 -8.28 47.70 -1.17 51.92 - - - - server64 True
PRIMO_BST_CL 327 160 0 0 -02:59:28 00:00:37 -2.44 49.46 -3.93 49.29 2.13 51.31 - - - - server65 False
IntFOLD5-TS -17 319 0 0 -40:37:23 00:00:23 -13.86 52.58 -13.58 51.77 -9.54 55.87 - - - - server75 False
IntFOLD6-TS -57 336 0 0 -31:00:49 00:00:32 -14.33 52.51 -14.01 51.79 -10.09 56.00 - - - - server90 False
BestSingleStructuralTemplate -48 329 0 0 -04:33:00 00:00:32 -17.92 52.16 -17.15 51.52 -9.49 55.93 - - - - server999 False
NaiveBLAST - model_1 per target comparison with the best: 1-year - [2021-04-23 - 2022-04-16]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best