1. 3D - Protein Structure Prediction
  2. Targets for 6-months
  3. Server PRIMO_BST_3D

CAMEO-3D: Server Pairwise Comparison 6-months Performance (2021-10-22 - 2022-04-16)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

PRIMO_BST_3D - Pairwise Comparison on common targets - dataset: 6-months [2021-10-22 - 2022-04-16]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
PRIMO_BST_3D - Reference
Naive AlphaFoldDB 100 114 23 0 0 --3:03:56 02:56:36 -40.40 40.31 -34.53 42.71 -39.32 42.61 - - - - server100 True
PaFold -127 91 0 0 -65:07:26 03:13:02 -27.60 46.31 -22.95 49.06 -17.75 45.95 - - - - server101 False
Robetta -99 85 0 0 -08:43:56 03:07:05 -24.50 47.02 -20.81 49.56 -14.05 47.01 - - - - server11 False
Phyre2 -182 107 0 0 --2:05:18 03:12:47 -4.98 43.78 -4.65 47.13 -5.71 43.70 - - - - server17 False
RoseTTAFold -177 104 0 0 -08:56:38 03:09:05 -28.32 43.78 -23.70 47.23 -17.95 44.55 - - - - server19 False
SWISS-MODEL -184 108 0 0 --4:58:01 03:06:53 -14.73 43.71 -11.27 47.19 -8.54 43.70 - - - - server20 False
RaptorX 7 49 0 0 -06:35:49 03:07:24 -20.24 42.96 -16.96 46.92 -9.59 42.05 - - - - server22 False
SPARKS-X 192 0 0 0 - - - - - - - - - - - - server30 True
IntFOLD3-TS -142 99 0 0 -36:38:56 03:08:10 -15.40 43.76 -12.69 47.16 -11.49 43.39 - - - - server33 False
NaiveBLAST -128 95 0 0 --4:49:53 03:10:58 -1.44 45.15 1.31 48.16 -3.61 43.25 - - - - server36 False
IntFOLD4-TS -129 99 0 0 -52:09:28 03:06:59 -18.11 43.63 -15.01 47.14 -16.63 45.24 - - - - server58 False
PRIMO -49 103 0 0 --1:45:51 03:08:05 -2.82 43.05 -2.45 46.80 -1.21 40.80 - - - - server61 False
PRIMO_HHS_3D 125 31 0 0 -00:57:16 02:16:33 -4.53 37.06 -2.85 43.13 -7.30 45.32 - - - - server63 True
PRIMO_HHS_CL 113 31 0 0 -01:06:15 02:07:52 -9.17 39.81 -6.96 45.92 -10.98 46.84 - - - - server64 True
PRIMO_BST_CL -35 97 0 0 --1:44:58 03:06:52 -2.89 43.09 -2.50 46.82 -0.85 39.96 - - - - server65 False
IntFOLD5-TS -115 95 0 0 -29:48:04 03:09:55 -18.47 44.43 -15.46 47.55 -17.01 43.43 - - - - server75 False
IntFOLD6-TS -146 103 0 0 -26:27:00 03:08:42 -20.30 43.73 -16.37 47.19 -17.78 43.40 - - - - server90 False
pureAF2_orig -179 106 0 0 -34:02:04 03:12:22 -40.49 44.14 -32.94 47.59 -31.72 43.43 - - - - server96 False
pureAF2_notemp -183 108 0 0 -39:18:06 03:12:12 -40.75 43.71 -33.24 47.19 -32.57 43.70 - - - - server97 False
ZlxFold -154 96 0 0 -59:59:02 03:13:25 -37.16 45.77 -30.44 48.71 -29.96 44.77 - - - - server98 False
BestSingleStructuralTemplate -161 104 0 0 -00:52:14 03:05:03 -21.97 43.44 -18.46 47.05 -17.51 42.47 - - - - server999 False
Naive AlphaFoldDB 90 76 34 0 0 --4:53:22 03:07:04 -34.11 44.13 -28.87 46.10 -30.72 45.07 - - - - server99 False
PRIMO_BST_3D - model_1 per target comparison with the best: 6-months - [2021-10-22 - 2022-04-16]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best