1. 3D - Protein Structure Prediction
  2. Targets for 6-months
  3. Server PRIMO

CAMEO-3D: Server Pairwise Comparison 6-months Performance (2021-10-22 - 2022-04-16)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

PRIMO - Pairwise Comparison on common targets - dataset: 6-months [2021-10-22 - 2022-04-16]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
PRIMO - Reference
Naive AlphaFoldDB 100 163 29 0 0 --3:28:07 02:32:26 -39.26 42.65 -32.32 46.02 -42.13 39.98 - - - - server100 True
PaFold -78 108 0 0 -66:28:19 03:06:15 -24.95 48.85 -20.43 51.52 -15.34 48.83 - - - - server101 False
Robetta -50 99 0 0 -08:45:21 02:59:53 -22.46 49.20 -18.77 51.79 -12.33 48.93 - - - - server11 False
Phyre2 -133 122 0 0 --2:14:12 03:06:35 -2.71 46.44 -2.44 49.65 -4.51 45.74 - - - - server17 False
RoseTTAFold -128 120 0 0 -09:08:04 03:02:28 -26.00 46.25 -21.51 49.57 -14.95 47.56 - - - - server19 False
SWISS-MODEL -135 125 0 0 --3:02:13 03:03:27 -12.03 46.53 -8.75 49.73 -8.37 46.68 - - - - server20 False
RaptorX 56 61 0 0 -07:09:36 03:08:14 -15.72 47.63 -13.62 50.70 -7.67 47.05 - - - - server22 False
SPARKS-X 241 0 0 0 - - - - - - - - - - - - server30 True
IntFOLD3-TS -93 117 0 0 -35:58:27 03:02:19 -13.16 46.68 -10.79 49.77 -9.68 47.55 - - - - server33 False
NaiveBLAST -79 110 0 0 --4:55:37 03:05:08 1.09 48.03 3.52 50.69 -2.89 46.32 - - - - server36 False
IntFOLD4-TS -80 114 0 0 -52:15:40 03:00:19 -16.13 46.38 -13.20 49.67 -15.11 47.46 - - - - server58 False
PRIMO_BST_3D 49 103 0 0 -00:14:09 02:53:56 2.82 45.88 2.45 49.26 1.21 42.01 - - - - server62 False
PRIMO_HHS_3D 174 31 0 0 -00:58:32 02:13:07 -1.27 40.64 0.18 46.29 -8.02 44.18 - - - - server63 True
PRIMO_HHS_CL 162 35 0 0 -01:13:31 02:01:25 -9.89 40.01 -7.45 46.29 -9.02 48.01 - - - - server64 True
PRIMO_BST_CL 14 109 0 0 --1:59:16 02:57:29 0.00 46.47 0.00 49.81 0.00 44.18 - - - - server65 False
IntFOLD5-TS -66 111 0 0 -28:53:28 03:02:04 -16.21 46.91 -13.78 49.87 -15.81 45.42 - - - - server75 False
IntFOLD6-TS -97 120 0 0 -26:02:04 03:01:37 -17.53 46.48 -14.17 49.76 -15.56 46.82 - - - - server90 False
pureAF2_orig -130 124 0 0 -33:56:59 03:06:17 -38.01 46.72 -30.67 49.97 -29.40 46.60 - - - - server96 False
pureAF2_notemp -134 126 0 0 -39:16:20 03:05:43 -38.12 46.33 -30.96 49.60 -29.94 46.68 - - - - server97 False
ZlxFold -105 114 0 0 -60:17:52 03:05:14 -35.00 48.14 -28.28 51.04 -27.51 47.75 - - - - server98 False
BestSingleStructuralTemplate -112 121 0 0 -00:51:13 03:01:08 -19.85 46.51 -16.39 49.77 -16.45 46.07 - - - - server999 False
Naive AlphaFoldDB 90 125 42 0 0 --3:09:14 02:51:13 -34.52 45.34 -27.99 48.43 -33.60 44.86 - - - - server99 False
PRIMO - model_1 per target comparison with the best: 6-months - [2021-10-22 - 2022-04-16]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best