1. 3D - Protein Structure Prediction
  2. Targets for 6-months
  3. Server Naive AlphaFoldDB 100

CAMEO-3D: Server Pairwise Comparison 6-months Performance (2023-10-06 - 2024-03-30)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

Naive AlphaFoldDB 100 - Pairwise Comparison on common targets - dataset: 6-months [2023-10-06 - 2024-03-30]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
Naive AlphaFoldDB 100 - Reference
PaFold 192 0 0 0 - - - - - - - - - - - - server101 True
HeliXonAI 192 0 0 0 - - - - - - - - - - - - server104 True
OpenComplex -146 95 0 0 -14:51:55 00:32:05 -1.97 82.60 -1.52 79.02 -0.58 82.00 - - - - server111 False
IntFOLD7 -138 96 0 0 -27:58:33 00:32:46 0.96 82.76 0.64 79.05 0.28 83.68 - - - - server113 False
Robetta 192 0 0 0 - - - - - - - - - - - - server11 True
ZJUT-DeepAssembly 192 0 0 0 - - - - - - - - - - - - server120 True
MultiDFold 192 0 0 0 - - - - - - - - - - - - server121 True
MEGA-EvoGen 192 0 0 0 - - - - - - - - - - - - server122 True
AIRFold 49 42 0 0 -38:26:47 01:03:20 -1.38 80.67 -0.84 78.01 -0.21 86.51 - - - - server127 False
ManiFold 123 19 0 0 -41:37:29 02:07:10 -2.68 78.48 -1.05 77.31 -0.25 85.15 - - - - server129 True
PAthreader 192 0 0 0 - - - - - - - - - - - - server130 True
PAthreader2 192 0 0 0 - - - - - - - - - - - - server131 True
Phyre2 -154 98 0 0 -00:06:27 00:31:32 37.71 82.94 28.86 79.06 20.15 83.03 - - - - server17 False
RoseTTAFold -83 77 0 0 -05:01:03 00:08:16 10.58 82.99 7.82 78.93 12.19 81.66 - - - - server19 False
SWISS-MODEL -157 101 0 0 --1:37:59 00:28:46 -0.07 82.86 0.09 79.16 -0.06 83.19 - - - - server20 False
RaptorX 192 0 0 0 - - - - - - - - - - - - server22 True
SPARKS-X 192 0 0 0 - - - - - - - - - - - - server30 True
NaiveBLAST -106 81 0 0 --1:25:24 00:35:08 40.54 84.09 34.93 80.02 16.08 82.27 - - - - server36 False
PRIMO 192 0 0 0 - - - - - - - - - - - - server61 True
PRIMO_BST_3D 192 0 0 0 - - - - - - - - - - - - server62 True
PRIMO_HHS_3D 192 0 0 0 - - - - - - - - - - - - server63 True
PRIMO_HHS_CL 192 0 0 0 - - - - - - - - - - - - server64 True
PRIMO_BST_CL 192 0 0 0 - - - - - - - - - - - - server65 True
IntFOLD5-TS -158 100 0 0 -32:14:50 00:31:32 23.44 82.82 18.73 79.15 13.22 83.21 - - - - server75 False
IntFOLD6-TS -159 101 0 0 -26:32:29 00:31:18 22.51 82.86 18.06 79.16 14.39 83.19 - - - - server90 False
BestSingleStructuralTemplate -116 88 0 0 -04:31:37 00:28:07 19.75 83.04 15.78 79.08 11.48 82.29 - - - - server999 False
Naive AlphaFoldDB 90 -96 101 0 0 --1:59:59 00:31:11 0.03 82.86 0.05 79.16 0.05 83.19 - - - - server99 False
Naive AlphaFoldDB 100 - model_1 per target comparison with the best: 6-months - [2023-10-06 - 2024-03-30]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best