1. 3D - Protein Structure Prediction
  2. Targets for 1-year
  3. Server Naive AlphaFoldDB 100

CAMEO-3D: Server Pairwise Comparison 1-year Performance (2023-04-07 - 2024-03-30)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

Naive AlphaFoldDB 100 - Pairwise Comparison on common targets - dataset: 1-year [2023-04-07 - 2024-03-30]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
Naive AlphaFoldDB 100 - Reference
PaFold 377 0 0 0 - - - - - - - - - - - - server101 True
HeliXonAI 377 0 0 0 - - - - - - - - - - - - server104 True
OpenComplex -327 368 0 0 -11:31:57 00:20:19 -1.29 84.35 -1.17 80.25 -0.48 80.93 - - - - server111 False
IntFOLD7 -241 324 0 0 -29:30:43 00:22:04 2.20 84.31 1.46 80.22 1.01 81.44 - - - - server113 False
Robetta 375 2 0 0 -56:19:22 00:06:41 27.16 90.97 20.07 84.94 23.47 86.77 - - - - server11 True
ZJUT-DeepAssembly 377 0 0 0 - - - - - - - - - - - - server120 True
MultiDFold 377 0 0 0 - - - - - - - - - - - - server121 True
MEGA-EvoGen 377 0 0 0 - - - - - - - - - - - - server122 True
AIRFold -8 202 0 0 -24:10:46 00:30:14 -1.20 83.75 -1.06 79.91 -0.54 82.99 - - - - server127 False
ManiFold -45 216 0 0 -34:25:36 00:28:41 -0.91 84.93 -0.84 80.66 -0.56 85.05 - - - - server129 False
PAthreader 377 0 0 0 - - - - - - - - - - - - server130 True
PAthreader2 377 0 0 0 - - - - - - - - - - - - server131 True
Phyre2 -331 371 0 0 -01:02:36 00:20:09 29.31 84.46 23.19 80.27 15.56 81.12 - - - - server17 False
RoseTTAFold -229 313 0 0 -07:09:36 00:08:11 11.06 85.21 8.56 80.72 12.71 80.91 - - - - server19 False
SWISS-MODEL -339 376 0 0 --1:47:32 00:19:02 1.44 84.43 1.36 80.29 0.97 81.26 - - - - server20 False
RaptorX 377 0 0 0 - - - - - - - - - - - - server22 True
SPARKS-X 377 0 0 0 - - - - - - - - - - - - server30 True
NaiveBLAST -238 327 0 0 --1:38:40 00:21:52 29.92 85.68 26.83 81.16 13.16 81.42 - - - - server36 False
PRIMO 354 8 0 0 -03:44:48 00:09:47 33.33 88.89 27.33 82.49 -6.96 82.52 - - - - server61 True
PRIMO_BST_3D 361 5 0 0 -02:52:49 00:11:12 32.33 88.65 27.75 82.02 - - - - - - server62 True
PRIMO_HHS_3D 369 4 0 0 -03:50:55 00:09:38 23.44 90.39 16.74 82.44 -0.48 97.37 - - - - server63 True
PRIMO_HHS_CL 371 2 0 0 -04:07:41 00:12:43 8.92 89.02 6.33 80.26 - - - - - - server64 True
PRIMO_BST_CL 356 8 0 0 -03:28:58 00:09:36 26.55 90.01 23.08 83.47 4.44 94.46 - - - - server65 True
IntFOLD5-TS -307 354 0 0 -34:37:32 00:20:47 18.84 84.18 15.11 80.13 8.22 81.21 - - - - server75 False
IntFOLD6-TS -311 357 0 0 -27:20:25 00:20:41 18.34 84.22 14.68 80.16 9.63 81.31 - - - - server90 False
BestSingleStructuralTemplate -276 337 0 0 -04:56:20 00:18:08 14.23 84.38 11.74 80.23 7.59 80.74 - - - - server999 False
Naive AlphaFoldDB 90 -184 376 0 0 -00:00:00 00:20:02 0.07 84.44 0.09 80.32 0.27 81.26 - - - - server99 False
Naive AlphaFoldDB 100 - model_1 per target comparison with the best: 1-year - [2023-04-07 - 2024-03-30]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best