1. 3D - Protein Structure Prediction
  2. Targets for 3-months
  3. Server Naive AlphaFoldDB 90

CAMEO-3D: Server Pairwise Comparison 3-months Performance (2022-01-21 - 2022-04-16)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

Naive AlphaFoldDB 90 - Pairwise Comparison on common targets - dataset: 3-months [2022-01-21 - 2022-04-16]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
Naive AlphaFoldDB 90 - Reference
Naive AlphaFoldDB 100 22 42 0 0 -00:00:04 00:00:53 -0.06 82.48 -0.06 78.48 1.88 87.80 - - - - server100 True
PaFold -66 42 0 0 -74:21:01 00:02:53 5.10 82.71 3.28 78.83 8.06 86.85 - - - - server101 False
HeliXonAI -88 53 0 0 -74:58:18 00:02:15 -4.35 81.14 -4.67 76.70 2.30 87.97 - - - - server104 False
RocketX -124 64 0 0 -32:29:09 00:02:00 18.05 81.64 11.54 77.23 21.48 87.36 - - - - server106 False
Robetta -63 42 0 0 -17:20:00 00:02:53 7.31 82.71 5.27 78.83 6.75 86.85 - - - - server11 False
Phyre2 -121 63 0 0 -01:10:59 00:02:02 20.88 81.69 16.71 77.20 22.57 87.36 - - - - server17 False
RoseTTAFold -118 61 0 0 -15:22:37 00:02:05 6.09 81.70 3.65 77.40 10.63 87.36 - - - - server19 False
SWISS-MODEL -123 62 0 0 -00:02:24 00:01:40 12.75 81.77 10.52 77.21 14.20 87.36 - - - - server20 False
RaptorX -19 23 0 0 -11:54:04 00:03:07 11.75 78.52 7.40 75.56 9.67 85.46 - - - - server22 False
SPARKS-X 64 0 0 0 - - - - - - - - - - - - server30 True
IntFOLD3-TS -116 62 0 0 -38:57:38 00:02:03 13.03 81.39 10.05 77.02 10.09 87.02 - - - - server33 False
NaiveBLAST -104 55 0 0 --1:59:02 00:01:20 20.48 82.30 18.04 77.41 20.92 87.53 - - - - server36 False
IntFOLD4-TS -114 58 0 0 -50:37:34 00:01:19 10.52 81.02 7.89 76.71 10.45 86.85 - - - - server58 False
PRIMO -65 44 0 0 -02:40:34 00:00:36 23.04 80.68 18.89 76.69 30.20 86.68 - - - - server61 False
PRIMO_BST_3D -31 35 0 0 -02:59:10 00:00:33 25.07 80.60 21.16 76.48 29.57 85.71 - - - - server62 False
PRIMO_HHS_3D 33 14 0 0 -03:23:46 00:00:32 23.48 76.78 20.69 74.88 13.28 85.66 - - - - server63 True
PRIMO_HHS_CL 21 19 0 0 -02:54:49 00:00:28 24.21 79.37 18.73 77.24 27.93 85.01 - - - - server64 True
PRIMO_BST_CL -60 45 0 0 -02:42:54 00:00:35 22.41 80.86 18.51 76.81 24.35 87.40 - - - - server65 False
IntFOLD5-TS -125 64 0 0 -27:48:17 00:02:00 11.32 81.64 7.94 77.23 9.24 87.36 - - - - server75 False
IntFOLD6-TS -119 61 0 0 -23:36:17 00:02:04 11.75 82.10 8.58 77.61 12.36 87.36 - - - - server90 False
pureAF2_orig -121 62 0 0 -25:25:21 00:02:04 -3.92 81.46 -4.24 77.08 0.86 87.14 - - - - server96 False
pureAF2_notemp -126 64 0 0 -29:37:25 00:02:00 -3.67 81.64 -4.15 77.23 0.74 87.36 - - - - server97 False
ZlxFold -96 52 0 0 -62:57:30 00:02:24 -2.22 81.95 -2.64 77.85 1.25 87.14 - - - - server98 False
BestSingleStructuralTemplate -114 62 0 0 -03:44:39 00:02:04 8.10 81.77 5.82 77.32 13.43 87.36 - - - - server999 False
Naive AlphaFoldDB 90 - model_1 per target comparison with the best: 3-months - [2022-01-21 - 2022-04-16]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best