1. 3D - Protein Structure Prediction
  2. Targets for 3-months
  3. Server SWISS-MODEL

CAMEO-3D: Server Pairwise Comparison 3-months Performance (2024-01-05 - 2024-03-30)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

SWISS-MODEL - Pairwise Comparison on common targets - dataset: 3-months [2024-01-05 - 2024-03-30]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
SWISS-MODEL - Reference
Naive AlphaFoldDB 100 81 57 38 0 -00:01:49 00:06:58 -0.83 83.62 -0.66 79.27 0.66 81.94 - - - - server100 False
PaFold 184 0 38 0 - - - - - - - - - - - - server101 True
HeliXonAI 184 0 38 0 - - - - - - - - - - - - server104 True
OpenComplex 0 93 38 0 -22:35:11 00:07:22 -3.43 82.02 -3.10 77.88 -3.20 77.87 - - - - server111 False
IntFOLD7 15 86 38 0 -30:37:53 00:07:30 0.42 82.30 0.04 78.08 -0.81 78.33 - - - - server113 False
Robetta 184 0 38 0 -37:10:01 00:38:37 - - - - - - - - - - server11 True
ZJUT-DeepAssembly 184 0 38 0 - - - - - - - - - - - - server120 True
MultiDFold 184 0 38 0 - - - - - - - - - - - - server121 True
MEGA-EvoGen 184 0 38 0 - - - - - - - - - - - - server122 True
AIRFold 165 12 38 0 -55:58:35 00:04:58 -4.79 75.12 -4.07 72.50 1.48 91.19 - - - - server127 True
ManiFold 184 0 38 0 - - - - - - - - - - - - server129 True
PAthreader 184 0 38 0 - - - - - - - - - - - - server130 True
PAthreader2 184 0 38 0 - - - - - - - - - - - - server131 True
Phyre2 2 93 38 0 -00:26:25 00:07:19 35.22 81.96 26.68 77.85 20.79 77.81 - - - - server17 False
RoseTTAFold 9 88 38 0 -05:06:00 00:07:37 9.54 82.16 6.85 77.98 11.06 78.13 - - - - server19 False
RaptorX 184 0 38 0 - - - - - - - - - - - - server22 True
SPARKS-X 184 0 38 0 - - - - - - - - - - - - server30 True
NaiveBLAST 32 75 38 0 --1:52:45 00:07:48 38.53 82.89 33.75 78.51 20.40 76.42 - - - - server36 False
PRIMO 184 0 38 0 - - - - - - - - - - - - server61 True
PRIMO_BST_3D 184 0 38 0 - - - - - - - - - - - - server62 True
PRIMO_HHS_3D 184 0 38 0 - - - - - - - - - - - - server63 True
PRIMO_HHS_CL 184 0 38 0 - - - - - - - - - - - - server64 True
PRIMO_BST_CL 184 0 38 0 - - - - - - - - - - - - server65 True
IntFOLD5-TS -1 95 38 0 -34:35:10 00:07:28 21.49 82.10 16.88 77.96 12.89 78.18 - - - - server75 False
IntFOLD6-TS -1 96 38 0 -27:56:43 00:07:28 20.58 82.15 16.31 77.98 13.33 78.31 - - - - server90 False
BestSingleStructuralTemplate 21 84 38 0 -04:46:05 00:06:59 17.94 82.37 13.64 78.17 16.14 79.61 - - - - server999 False
Naive AlphaFoldDB 90 27 84 38 0 -00:01:25 00:07:13 -0.36 83.46 -0.36 79.13 0.52 81.44 - - - - server99 False
SWISS-MODEL - model_1 per target comparison with the best: 3-months - [2024-01-05 - 2024-03-30]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best