1. 3D - Protein Structure Prediction
  2. Targets for 1-year
  3. Server SWISS-MODEL

CAMEO-3D: Server Pairwise Comparison 1-year Performance (2023-04-07 - 2024-03-30)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

SWISS-MODEL - Pairwise Comparison on common targets - dataset: 1-year [2023-04-07 - 2024-03-30]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
SWISS-MODEL - Reference
Naive AlphaFoldDB 100 339 376 165 0 -00:12:28 00:06:34 -1.44 82.99 -1.36 78.93 -0.97 80.29 - - - - server100 False
PaFold 716 0 165 0 - - - - - - - - - - - - server101 True
HeliXonAI 716 0 165 0 - - - - - - - - - - - - server104 True
OpenComplex 12 698 165 0 -11:57:33 00:07:17 -6.90 78.34 -5.98 75.04 -2.90 78.49 - - - - server111 False
IntFOLD7 98 615 165 0 -29:45:49 00:07:38 -3.43 78.23 -3.21 74.93 -1.30 78.51 - - - - server113 False
Robetta 714 2 165 0 -49:55:18 00:18:17 -4.87 58.94 -8.02 56.85 13.55 76.85 - - - - server11 True
ZJUT-DeepAssembly 716 0 165 0 - - - - - - - - - - - - server120 True
MultiDFold 716 0 165 0 - - - - - - - - - - - - server121 True
MEGA-EvoGen 716 0 165 0 - - - - - - - - - - - - server122 True
AIRFold 331 384 165 0 -24:20:40 00:07:12 -7.32 77.65 -6.27 74.58 -2.63 79.74 - - - - server127 False
ManiFold 294 419 165 0 -33:00:22 00:07:14 -7.22 78.13 -6.26 74.82 -2.97 80.97 - - - - server129 False
PAthreader 716 0 165 0 - - - - - - - - - - - - server130 True
PAthreader2 716 0 165 0 - - - - - - - - - - - - server131 True
Phyre2 8 703 165 0 -01:10:20 00:07:41 23.02 78.59 17.73 75.20 13.38 78.41 - - - - server17 False
RoseTTAFold 110 603 165 0 -07:17:23 00:07:40 5.41 78.66 3.59 75.17 9.25 78.48 - - - - server19 False
RaptorX 716 0 165 0 - - - - - - - - - - - - server22 True
SPARKS-X 716 0 165 0 - - - - - - - - - - - - server30 True
NaiveBLAST 101 613 165 0 --1:52:52 00:07:39 23.85 79.66 21.69 76.04 12.20 78.98 - - - - server36 False
PRIMO 693 22 165 0 -03:39:15 00:03:49 6.26 70.86 5.38 67.98 8.50 68.65 - - - - server61 True
PRIMO_BST_3D 700 15 165 0 -03:04:34 00:03:44 6.99 66.06 6.47 64.51 16.35 59.46 - - - - server62 True
PRIMO_HHS_3D 708 8 165 0 -03:32:40 00:03:01 5.23 73.90 3.43 70.68 2.26 96.68 - - - - server63 True
PRIMO_HHS_CL 710 6 165 0 -03:33:36 00:03:16 5.03 68.44 2.91 66.81 2.52 57.12 - - - - server64 True
PRIMO_BST_CL 695 20 165 0 -03:30:57 00:04:20 4.59 69.86 4.54 67.30 5.73 69.49 - - - - server65 True
IntFOLD5-TS 32 678 165 0 -34:44:30 00:07:46 12.73 78.14 9.86 74.89 6.93 78.48 - - - - server75 False
IntFOLD6-TS 28 683 165 0 -27:22:20 00:07:45 12.21 78.12 9.33 74.89 7.55 78.55 - - - - server90 False
BestSingleStructuralTemplate 63 649 165 0 -05:07:53 00:07:07 7.40 78.22 5.91 74.97 6.18 78.21 - - - - server999 False
Naive AlphaFoldDB 90 155 559 165 0 -00:08:16 00:07:15 -1.07 82.43 -0.99 78.40 -0.66 80.40 - - - - server99 False
SWISS-MODEL - model_1 per target comparison with the best: 1-year - [2023-04-07 - 2024-03-30]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best