1. 3D - Protein Structure Prediction
  2. Targets for 6-months
  3. Server SWISS-MODEL

CAMEO-3D: Server Pairwise Comparison 6-months Performance (2023-10-06 - 2024-03-30)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

SWISS-MODEL - Pairwise Comparison on common targets - dataset: 6-months [2023-10-06 - 2024-03-30]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
SWISS-MODEL - Reference
Naive AlphaFoldDB 100 157 192 83 0 -00:22:01 00:06:45 -0.72 82.83 -0.73 79.06 -0.02 78.14 - - - - server100 False
PaFold 349 0 83 0 - - - - - - - - - - - - server101 True
HeliXonAI 349 0 83 0 - - - - - - - - - - - - server104 True
OpenComplex 11 334 83 0 -16:00:54 00:07:03 -5.95 78.89 -5.06 75.70 -2.25 75.97 - - - - server111 False
IntFOLD7 19 328 83 0 -28:09:42 00:07:57 -2.39 79.18 -2.28 75.88 -1.11 76.43 - - - - server113 False
Robetta 349 0 83 0 -37:10:01 00:38:37 - - - - - - - - - - server11 True
ZJUT-DeepAssembly 349 0 83 0 - - - - - - - - - - - - server120 True
MultiDFold 349 0 83 0 - - - - - - - - - - - - server121 True
MEGA-EvoGen 349 0 83 0 - - - - - - - - - - - - server122 True
AIRFold 206 143 83 0 -41:08:54 00:06:39 -5.90 78.82 -4.72 75.86 -2.26 78.68 - - - - server127 False
ManiFold 280 68 83 0 -42:43:41 00:05:12 -5.38 77.90 -4.08 75.66 -1.11 85.36 - - - - server129 True
PAthreader 349 0 83 0 - - - - - - - - - - - - server130 True
PAthreader2 349 0 83 0 - - - - - - - - - - - - server131 True
Phyre2 3 343 83 0 -00:29:34 00:07:49 24.66 79.12 19.18 75.80 11.65 76.25 - - - - server17 False
RoseTTAFold 74 274 83 0 -06:12:42 00:08:03 6.59 79.00 4.62 75.62 8.99 75.35 - - - - server19 False
RaptorX 349 0 83 0 - - - - - - - - - - - - server22 True
SPARKS-X 349 0 83 0 - - - - - - - - - - - - server30 True
NaiveBLAST 51 297 83 0 --1:52:20 00:08:10 25.53 80.64 23.05 76.95 9.65 76.13 - - - - server36 False
PRIMO 349 0 83 0 - - - - - - - - - - - - server61 True
PRIMO_BST_3D 349 0 83 0 - - - - - - - - - - - - server62 True
PRIMO_HHS_3D 349 0 83 0 - - - - - - - - - - - - server63 True
PRIMO_HHS_CL 349 0 83 0 - - - - - - - - - - - - server64 True
PRIMO_BST_CL 349 0 83 0 - - - - - - - - - - - - server65 True
IntFOLD5-TS -1 346 83 0 -33:11:07 00:07:52 14.21 78.99 11.26 75.78 5.66 76.23 - - - - server75 False
IntFOLD6-TS -2 348 83 0 -27:11:43 00:07:52 13.92 79.06 10.81 75.83 6.26 76.42 - - - - server90 False
BestSingleStructuralTemplate 41 306 83 0 -05:05:42 00:06:43 9.17 78.86 7.54 75.70 5.59 75.62 - - - - server999 False
Naive AlphaFoldDB 90 61 287 83 0 -00:14:25 00:07:45 -0.25 82.17 -0.28 78.52 0.17 78.16 - - - - server99 False
SWISS-MODEL - model_1 per target comparison with the best: 6-months - [2023-10-06 - 2024-03-30]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best