1. 3D - Protein Structure Prediction
  2. Targets for 6-months
  3. Server PRIMO_BST_CL

CAMEO-3D: Server Pairwise Comparison 6-months Performance (2021-10-22 - 2022-04-16)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

PRIMO_BST_CL - Pairwise Comparison on common targets - dataset: 6-months [2021-10-22 - 2022-04-16]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
PRIMO_BST_CL - Reference
Naive AlphaFoldDB 100 149 26 0 0 --3:26:21 02:34:08 -38.57 42.68 -31.81 46.19 -43.10 38.11 - - - - server100 True
PaFold -92 100 0 0 -64:27:57 03:04:58 -23.69 49.92 -19.39 52.46 -17.28 47.89 - - - - server101 False
Robetta -64 93 0 0 -09:18:20 02:59:51 -21.97 50.34 -18.14 52.78 -13.36 47.95 - - - - server11 False
Phyre2 -147 116 0 0 --2:15:24 03:05:34 -2.85 47.18 -2.57 50.32 -7.52 45.19 - - - - server17 False
RoseTTAFold -142 114 0 0 -09:53:22 03:00:27 -26.15 46.84 -21.42 50.15 -17.49 46.13 - - - - server19 False
SWISS-MODEL -149 118 0 0 --3:02:26 03:03:11 -12.26 47.16 -8.98 50.34 -9.53 45.19 - - - - server20 False
RaptorX 42 57 0 0 -06:51:13 03:04:07 -16.25 47.18 -13.80 50.50 -9.11 43.03 - - - - server22 False
SPARKS-X 227 0 0 0 - - - - - - - - - - - - server30 True
IntFOLD3-TS -107 110 0 0 -35:53:43 03:00:37 -12.69 47.79 -10.24 50.75 -11.79 46.01 - - - - server33 False
NaiveBLAST -93 105 0 0 --4:55:16 03:05:30 0.94 48.77 3.36 51.25 -3.18 45.80 - - - - server36 False
IntFOLD4-TS -94 107 0 0 -51:44:29 02:58:07 -15.23 47.50 -12.33 50.66 -16.90 45.87 - - - - server58 False
PRIMO -14 109 0 0 -00:00:44 02:56:45 0.00 46.47 0.00 49.81 0.00 44.18 - - - - server61 False
PRIMO_BST_3D 35 97 0 0 -00:15:02 02:51:50 2.89 45.98 2.50 49.32 0.85 40.81 - - - - server62 False
PRIMO_HHS_3D 160 30 0 0 -01:17:52 01:58:43 -1.22 40.52 0.23 46.32 -8.83 37.45 - - - - server63 True
PRIMO_HHS_CL 148 34 0 0 -01:11:49 02:08:09 -9.68 40.55 -7.37 46.84 -12.94 45.13 - - - - server64 True
IntFOLD5-TS -80 103 0 0 -29:14:45 02:58:18 -15.03 48.08 -12.68 50.93 -17.52 43.09 - - - - server75 False
IntFOLD6-TS -111 112 0 0 -25:55:58 03:01:17 -17.00 47.40 -13.49 50.55 -19.21 45.23 - - - - server90 False
pureAF2_orig -144 117 0 0 -33:31:24 03:04:37 -37.37 47.36 -30.13 50.59 -31.43 45.02 - - - - server96 False
pureAF2_notemp -148 119 0 0 -38:25:10 03:04:34 -37.54 46.93 -30.46 50.19 -31.97 45.19 - - - - server97 False
ZlxFold -119 106 0 0 -60:14:39 03:04:27 -34.15 49.09 -27.62 51.88 -28.80 46.67 - - - - server98 False
BestSingleStructuralTemplate -126 112 0 0 -01:00:19 02:59:13 -19.94 47.09 -16.06 50.38 -18.38 44.11 - - - - server999 False
Naive AlphaFoldDB 90 111 37 0 0 --3:12:51 02:47:37 -34.29 45.70 -28.12 48.59 -30.45 47.42 - - - - server99 False
PRIMO_BST_CL - model_1 per target comparison with the best: 6-months - [2021-10-22 - 2022-04-16]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best