1. 3D - Protein Structure Prediction
  2. Targets for 6-months
  3. Server PRIMO_HHS_3D

CAMEO-3D: Server Pairwise Comparison 6-months Performance (2021-10-22 - 2022-04-16)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

PRIMO_HHS_3D - Pairwise Comparison on common targets - dataset: 6-months [2021-10-22 - 2022-04-16]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
PRIMO_HHS_3D - Reference
Naive AlphaFoldDB 100 -11 8 0 0 --4:27:41 03:32:49 -36.88 38.69 -31.55 42.65 -23.47 61.15 - - - - server100 True
PaFold -252 31 0 0 -62:45:48 03:20:50 -24.10 46.42 -20.37 49.34 -11.70 49.29 - - - - server101 False
Robetta -224 29 0 0 -07:52:53 03:16:56 -24.53 46.97 -20.68 49.77 -14.58 49.29 - - - - server11 False
Phyre2 -307 36 0 0 --3:15:22 03:21:03 -5.21 44.64 -5.50 48.04 -2.21 52.31 - - - - server17 False
RoseTTAFold -302 36 0 0 -05:20:02 03:16:27 -25.69 44.64 -21.83 48.04 -11.14 52.31 - - - - server19 False
SWISS-MODEL -309 36 0 0 --4:43:52 03:19:00 -13.58 44.64 -10.77 48.04 -7.26 52.31 - - - - server20 False
RaptorX -118 19 0 0 -05:50:50 02:58:50 -17.88 45.54 -15.10 49.01 -5.51 43.57 - - - - server22 False
SPARKS-X 67 0 0 0 - - - - - - - - - - - - server30 True
IntFOLD3-TS -267 30 0 0 -30:19:58 03:23:37 -15.00 45.02 -12.43 48.32 -5.20 57.58 - - - - server33 False
NaiveBLAST -253 29 0 0 --4:36:11 03:24:06 0.76 45.04 2.07 48.18 -2.26 48.51 - - - - server36 False
IntFOLD4-TS -254 29 0 0 -44:28:36 03:24:13 -17.67 43.45 -15.05 47.37 -6.83 60.35 - - - - server58 False
PRIMO -174 31 0 0 --1:01:28 03:11:39 1.27 41.91 -0.18 46.11 8.02 52.20 - - - - server61 False
PRIMO_BST_3D -125 31 0 0 --1:02:44 03:13:49 4.53 41.59 2.85 45.98 7.30 52.62 - - - - server62 False
PRIMO_HHS_CL -12 25 0 0 --1:54:18 03:12:40 -3.63 45.41 -3.84 48.88 1.04 62.37 - - - - server64 True
PRIMO_BST_CL -160 30 0 0 --2:42:08 03:16:35 1.22 41.74 -0.23 46.10 8.83 46.28 - - - - server65 False
IntFOLD5-TS -240 28 0 0 -25:19:53 03:26:12 -17.59 46.31 -15.28 49.29 -6.77 60.35 - - - - server75 False
IntFOLD6-TS -271 31 0 0 -21:26:48 03:23:30 -19.37 45.84 -15.73 48.94 -8.63 57.58 - - - - server90 False
pureAF2_orig -304 35 0 0 -34:04:57 03:20:48 -36.59 45.09 -30.01 48.27 -22.53 49.29 - - - - server96 False
pureAF2_notemp -308 36 0 0 -40:49:18 03:21:03 -36.89 44.64 -30.17 48.04 -22.16 52.31 - - - - server97 False
ZlxFold -279 33 0 0 -59:31:41 03:19:12 -32.87 46.63 -26.95 49.73 -21.88 49.29 - - - - server98 False
BestSingleStructuralTemplate -286 36 0 0 -00:18:31 03:17:42 -20.82 44.64 -18.11 48.04 -17.66 52.31 - - - - server999 False
Naive AlphaFoldDB 90 -49 11 0 0 --4:19:19 03:41:06 -27.06 45.91 -23.06 48.22 -23.42 61.15 - - - - server99 False
PRIMO_HHS_3D - model_1 per target comparison with the best: 6-months - [2021-10-22 - 2022-04-16]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best