1. 3D - Protein Structure Prediction
  2. Targets for 6-months
  3. Server PaFold

CAMEO-3D: Server Pairwise Comparison 6-months Performance (2021-10-22 - 2022-04-16)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

PaFold - Pairwise Comparison on common targets - dataset: 6-months [2021-10-22 - 2022-04-16]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
PaFold - Reference
Naive AlphaFoldDB 100 241 64 0 0 --68:10:22 67:50:11 -9.69 73.15 -7.14 72.13 -9.39 71.41 - - - - server100 True
Robetta 28 291 0 0 --53:33:29 67:18:10 1.83 74.35 1.26 72.50 2.09 67.86 - - - - server11 False
Phyre2 -55 315 0 0 --66:12:34 67:29:54 17.85 74.29 14.91 72.35 9.81 68.46 - - - - server17 False
RoseTTAFold -50 313 0 0 --58:59:32 67:22:09 0.45 74.18 0.35 72.31 2.08 68.32 - - - - server19 False
SWISS-MODEL -57 317 0 0 --68:11:24 67:54:49 10.02 74.38 9.25 72.41 5.56 68.46 - - - - server20 False
RaptorX 134 166 0 0 --57:47:24 68:27:14 6.73 73.95 5.15 72.07 4.70 68.25 - - - - server22 False
SPARKS-X 319 0 0 0 - - - - - - - - - - - - server30 True
IntFOLD3-TS -15 283 0 0 --28:42:59 68:09:24 9.39 74.91 8.05 72.81 4.10 68.23 - - - - server33 False
NaiveBLAST -1 268 0 0 --67:29:43 66:31:01 17.90 75.18 17.25 72.89 12.41 67.62 - - - - server36 False
IntFOLD4-TS -2 266 0 0 --13:39:42 68:00:56 7.92 74.83 6.54 72.76 2.88 68.85 - - - - server58 False
PRIMO 78 204 0 0 --67:31:41 69:34:34 19.09 74.24 15.91 72.32 16.38 67.47 - - - - server61 False
PRIMO_BST_3D 127 163 0 0 --66:52:34 68:20:28 22.70 73.77 19.18 72.00 18.34 65.78 - - - - server62 False
PRIMO_HHS_3D 252 60 0 0 --63:14:12 66:06:38 22.55 69.54 19.20 69.78 12.54 67.57 - - - - server63 True
PRIMO_HHS_CL 240 70 0 0 --64:16:19 67:04:19 19.05 71.42 15.23 70.96 15.78 75.49 - - - - server64 True
PRIMO_BST_CL 92 190 0 0 --65:32:03 67:32:55 19.65 74.10 16.24 72.32 16.42 67.97 - - - - server65 False
IntFOLD5-TS 12 247 0 0 --34:42:37 68:32:10 7.78 74.92 6.17 72.98 2.57 68.93 - - - - server75 False
IntFOLD6-TS -19 284 0 0 --37:32:07 68:09:13 6.35 74.67 5.19 72.63 0.54 68.34 - - - - server90 False
pureAF2_orig -52 316 0 0 --26:31:48 67:22:36 -11.68 74.39 -9.08 72.45 -10.41 68.98 - - - - server96 False
pureAF2_notemp -56 315 0 0 --21:17:13 67:23:12 -11.32 74.41 -8.90 72.47 -10.32 68.98 - - - - server97 False
ZlxFold -27 316 0 0 --5:14:39 67:22:36 -10.41 74.39 -7.96 72.45 -9.81 68.98 - - - - server98 False
BestSingleStructuralTemplate -34 297 0 0 --64:42:45 67:35:35 2.85 74.37 2.57 72.38 0.06 68.50 - - - - server999 False
Naive AlphaFoldDB 90 203 94 0 0 --69:13:58 68:47:28 -6.84 73.81 -4.54 72.73 -9.38 70.68 - - - - server99 False
PaFold - model_1 per target comparison with the best: 6-months - [2021-10-22 - 2022-04-16]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best