1. 3D - Protein Structure Prediction
  2. Targets for 3-months
  3. Server Naive AlphaFoldDB 90

CAMEO-3D: Server Pairwise Comparison 3-months Performance (2022-11-04 - 2023-01-28)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

Naive AlphaFoldDB 90 - Pairwise Comparison on common targets - dataset: 3-months [2022-11-04 - 2023-01-28]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
Naive AlphaFoldDB 90 - Reference
Naive AlphaFoldDB 100 33 46 0 0 --1:59:41 00:08:30 -0.07 84.47 -0.07 80.42 -0.82 75.57 - - - - server100 False
PaFold 122 0 0 0 - - - - - - - - - - - - server101 True
HeliXonAI 122 0 0 0 - - - - - - - - - - - - server104 True
OpenComplex -25 57 0 0 -12:09:30 00:06:47 -1.56 84.08 -1.40 79.83 -1.37 82.36 - - - - server111 False
IntFOLD7 0 48 0 0 -42:51:27 00:09:23 4.77 84.54 3.64 80.29 5.47 82.44 - - - - server113 False
Robetta 122 0 0 0 - - - - - - - - - - - - server11 True
ZJUT-DeepAssembly 45 23 0 0 -74:27:39 00:10:59 0.27 84.11 0.23 80.25 -0.73 74.85 - - - - server120 False
MultiDFold 45 23 0 0 -75:09:35 00:10:59 1.02 84.11 0.70 80.25 0.19 74.85 - - - - server121 False
MEGA-EvoGen 122 0 0 0 - - - - - - - - - - - - server122 True
AIRFold -22 57 0 0 -09:50:14 00:08:32 -1.20 84.09 -1.28 79.94 -0.69 79.51 - - - - server127 False
ManiFold -4 54 0 0 -26:26:45 00:06:52 -1.15 83.88 -1.27 79.67 -2.20 82.25 - - - - server129 False
PAthreader 45 23 0 0 -60:29:09 00:10:59 0.22 84.11 0.09 80.25 -0.81 74.85 - - - - server130 False
PAthreader2 61 16 0 0 -62:43:57 00:11:54 1.12 84.71 0.54 81.10 -0.89 70.77 - - - - server131 False
Phyre2 -38 62 0 0 -01:34:27 00:08:38 37.89 84.17 29.74 79.97 25.70 79.96 - - - - server17 False
RoseTTAFold 10 50 0 0 -14:46:52 00:09:06 10.99 84.38 8.07 80.02 9.26 80.72 - - - - server19 False
SWISS-MODEL -39 63 0 0 --1:56:26 00:08:25 30.44 84.20 24.35 79.96 20.05 79.96 - - - - server20 False
RaptorX 122 0 0 0 - - - - - - - - - - - - server22 True
SPARKS-X 122 0 0 0 - - - - - - - - - - - - server30 True
IntFOLD3-TS -40 63 0 0 -51:40:01 00:08:37 28.31 84.20 22.30 79.96 15.76 79.96 - - - - server33 False
NaiveBLAST -11 48 0 0 --1:51:51 00:08:42 39.21 84.91 34.16 80.26 23.97 79.96 - - - - server36 False
IntFOLD4-TS -34 61 0 0 -61:42:23 00:08:42 25.32 84.13 19.94 79.87 15.79 79.51 - - - - server58 False
PRIMO 6 47 0 0 -02:58:24 00:08:44 42.95 83.98 34.88 79.74 17.29 75.22 - - - - server61 False
PRIMO_BST_3D 18 41 0 0 -03:03:38 00:09:26 45.75 83.64 36.76 79.41 15.93 69.85 - - - - server62 False
PRIMO_HHS_3D 99 10 0 0 -03:24:59 00:09:08 50.21 83.31 40.33 80.03 10.65 88.77 - - - - server63 True
PRIMO_HHS_CL 87 18 0 0 -03:19:35 00:10:03 41.99 80.51 31.74 77.33 28.30 73.51 - - - - server64 True
PRIMO_BST_CL 2 48 0 0 -03:20:10 00:08:33 44.43 83.99 35.90 79.74 20.01 76.86 - - - - server65 False
IntFOLD5-TS -40 63 0 0 -35:18:21 00:08:37 25.14 84.20 19.59 79.96 13.39 79.96 - - - - server75 False
IntFOLD6-TS -28 58 0 0 -28:14:24 00:08:56 23.89 84.29 18.68 79.99 13.26 79.53 - - - - server90 False
BestSingleStructuralTemplate -31 60 0 0 -04:53:44 00:08:23 19.89 84.04 15.32 79.85 13.04 79.53 - - - - server999 False
Naive AlphaFoldDB 90 - model_1 per target comparison with the best: 3-months - [2022-11-04 - 2023-01-28]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best