1. 3D - Protein Structure Prediction
  2. Targets for 3-months
  3. Server NaiveBLAST

CAMEO-3D: Server Pairwise Comparison 3-months Performance (2022-11-04 - 2023-01-28)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

NaiveBLAST - Pairwise Comparison on common targets - dataset: 3-months [2022-11-04 - 2023-01-28]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
NaiveBLAST - Reference
Naive AlphaFoldDB 100 44 36 0 0 -00:07:44 00:00:32 -40.89 44.56 -35.63 45.33 -19.72 56.67 - - - - server100 False
PaFold 133 0 0 0 - - - - - - - - - - - - server101 True
HeliXonAI 133 0 0 0 - - - - - - - - - - - - server104 True
OpenComplex -14 58 0 0 -12:55:24 00:00:31 -40.72 44.86 -35.50 45.60 -24.42 60.54 - - - - server111 False
IntFOLD7 11 50 0 0 -39:18:13 00:00:30 -32.71 46.49 -28.98 47.29 -17.98 61.06 - - - - server113 False
Robetta 133 0 0 0 - - - - - - - - - - - - server11 True
ZJUT-DeepAssembly 56 28 0 0 -75:02:39 00:00:35 -33.50 48.88 -29.45 49.50 -26.98 51.88 - - - - server120 False
MultiDFold 56 28 0 0 -75:51:02 00:00:35 -31.51 48.88 -28.08 49.50 -26.21 51.88 - - - - server121 False
MEGA-EvoGen 133 0 0 0 - - - - - - - - - - - - server122 True
AIRFold -11 58 0 0 -09:39:35 00:00:29 -40.46 45.07 -35.42 45.80 -22.82 59.04 - - - - server127 False
ManiFold 7 51 0 0 -26:18:21 00:00:32 -42.41 43.12 -37.17 43.92 -25.25 60.01 - - - - server129 False
PAthreader 56 28 0 0 -57:59:29 00:00:35 -33.61 48.88 -29.58 49.50 -27.04 51.88 - - - - server130 False
PAthreader2 72 20 0 0 -57:37:03 00:00:29 -35.54 46.73 -31.28 48.23 -28.75 48.05 - - - - server131 False
Phyre2 -27 63 0 0 -01:43:25 00:00:30 -2.19 45.66 -5.20 46.24 1.68 59.47 - - - - server17 False
RoseTTAFold 21 46 0 0 -12:32:44 00:00:31 -28.51 44.13 -26.27 44.76 -10.72 60.61 - - - - server19 False
SWISS-MODEL -28 64 0 0 -00:04:38 00:00:31 -11.56 46.06 -12.35 46.57 -3.41 59.47 - - - - server20 False
RaptorX 133 0 0 0 - - - - - - - - - - - - server22 True
SPARKS-X 133 0 0 0 - - - - - - - - - - - - server30 True
IntFOLD3-TS -29 64 0 0 -50:05:18 00:00:30 -13.04 46.06 -12.80 46.57 -7.52 59.47 - - - - server33 False
IntFOLD4-TS -23 62 0 0 -59:42:11 00:00:29 -14.60 46.67 -14.37 47.02 -7.61 59.04 - - - - server58 False
PRIMO 17 50 0 0 -03:09:00 00:00:27 1.83 47.64 -0.23 48.21 5.37 62.64 - - - - server61 False
PRIMO_BST_3D 29 45 0 0 -03:18:57 00:00:26 4.65 46.22 1.32 46.13 4.31 60.27 - - - - server62 False
PRIMO_HHS_3D 110 10 0 0 -04:00:21 00:00:28 3.31 44.43 -1.23 44.36 -19.94 58.18 - - - - server63 True
PRIMO_HHS_CL 98 14 0 0 -03:58:38 00:00:23 7.24 53.14 2.45 51.23 4.01 49.22 - - - - server64 True
PRIMO_BST_CL 13 49 0 0 -03:28:50 00:00:30 2.10 46.24 -0.55 46.91 2.01 58.39 - - - - server65 False
IntFOLD5-TS -29 64 0 0 -34:27:09 00:00:30 -15.87 46.06 -15.44 46.57 -9.54 59.47 - - - - server75 False
IntFOLD6-TS -17 60 0 0 -27:29:51 00:00:30 -16.79 46.28 -16.16 46.86 -7.51 61.52 - - - - server90 False
BestSingleStructuralTemplate -20 61 0 0 -04:30:25 00:00:31 -21.35 46.18 -20.14 46.58 -7.91 61.52 - - - - server999 False
Naive AlphaFoldDB 90 11 48 0 0 -00:08:09 00:00:33 -39.21 45.69 -34.16 46.10 -23.97 55.99 - - - - server99 False
NaiveBLAST - model_1 per target comparison with the best: 3-months - [2022-11-04 - 2023-01-28]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best