1. 3D - Protein Structure Prediction
  2. Targets for 3-months
  3. Server Phyre2

CAMEO-3D: Server Pairwise Comparison 3-months Performance (2022-11-04 - 2023-01-28)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

Phyre2 - Pairwise Comparison on common targets - dataset: 3-months [2022-11-04 - 2023-01-28]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
Phyre2 - Reference
Naive AlphaFoldDB 100 71 45 0 0 --2:21:57 01:46:15 -37.90 46.61 -29.92 50.60 -26.57 49.82 - - - - server100 False
PaFold 160 0 0 0 - - - - - - - - - - - - server101 True
HeliXonAI 160 0 0 0 - - - - - - - - - - - - server104 True
OpenComplex 13 72 0 0 -11:17:42 01:25:59 -40.33 44.48 -32.06 48.58 -26.00 58.96 - - - - server111 False
IntFOLD7 38 62 0 0 -38:12:23 01:37:11 -33.97 45.06 -26.97 49.25 -19.67 59.37 - - - - server113 False
Robetta 160 0 0 0 - - - - - - - - - - - - server11 True
ZJUT-DeepAssembly 83 34 0 0 -73:19:19 01:40:11 -34.31 48.46 -26.96 52.22 -18.58 60.28 - - - - server120 False
MultiDFold 83 34 0 0 -74:06:55 01:40:11 -32.76 48.46 -25.88 52.22 -17.81 60.28 - - - - server121 False
MEGA-EvoGen 160 0 0 0 - - - - - - - - - - - - server122 True
AIRFold 16 71 0 0 -08:02:21 01:35:36 -39.27 45.33 -31.68 49.04 -24.29 57.57 - - - - server127 False
ManiFold 34 64 0 0 -24:53:13 01:25:35 -40.47 43.96 -32.37 48.17 -27.29 57.97 - - - - server129 False
PAthreader 83 34 0 0 -56:48:39 01:40:11 -34.47 48.46 -27.10 52.22 -18.64 60.28 - - - - server130 False
PAthreader2 99 25 0 0 -56:38:28 01:32:36 -36.00 47.01 -29.18 50.72 -16.90 59.89 - - - - server131 False
RoseTTAFold 48 58 0 0 -11:10:58 01:41:20 -27.28 45.25 -21.92 49.43 -15.61 55.71 - - - - server19 False
SWISS-MODEL -1 79 0 0 --2:26:15 01:38:46 -8.62 45.73 -6.59 49.59 -5.09 57.79 - - - - server20 False
RaptorX 160 0 0 0 - - - - - - - - - - - - server22 True
SPARKS-X 160 0 0 0 - - - - - - - - - - - - server30 True
IntFOLD3-TS -2 79 0 0 -47:40:53 01:35:49 -11.27 45.73 -8.79 49.59 -9.19 57.79 - - - - server33 False
NaiveBLAST 27 63 0 0 --2:16:35 01:43:55 2.19 47.85 5.20 51.44 -1.68 57.79 - - - - server36 False
IntFOLD4-TS 4 77 0 0 -57:35:08 01:34:58 -13.93 45.48 -11.18 49.29 -9.08 57.57 - - - - server58 False
PRIMO 44 58 0 0 -01:42:18 01:24:29 7.68 49.91 7.51 53.30 -1.25 56.03 - - - - server61 False
PRIMO_BST_3D 56 52 0 0 -01:52:15 01:21:29 8.68 47.72 7.74 51.23 -4.91 51.05 - - - - server62 False
PRIMO_HHS_3D 137 14 0 0 -02:50:53 00:49:34 9.20 47.84 7.50 51.26 0.12 78.24 - - - - server63 True
PRIMO_HHS_CL 125 22 0 0 -02:49:26 00:43:20 5.17 47.44 2.66 50.22 6.42 51.63 - - - - server64 True
PRIMO_BST_CL 40 60 0 0 -02:01:30 01:22:20 7.70 47.69 6.96 51.08 -2.09 54.30 - - - - server65 False
IntFOLD5-TS -2 79 0 0 -32:38:58 01:35:49 -14.23 45.73 -11.47 49.59 -11.21 57.79 - - - - server75 False
IntFOLD6-TS 10 74 0 0 -25:42:49 01:39:22 -15.55 45.62 -12.35 49.60 -11.86 57.17 - - - - server90 False
BestSingleStructuralTemplate 7 75 0 0 -03:05:02 01:34:50 -19.63 46.09 -15.78 49.74 -12.26 57.17 - - - - server999 False
Naive AlphaFoldDB 90 38 62 0 0 --2:25:33 01:43:05 -37.89 46.28 -29.74 50.23 -25.70 54.26 - - - - server99 False
Phyre2 - model_1 per target comparison with the best: 3-months - [2022-11-04 - 2023-01-28]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best