1. 3D - Protein Structure Prediction
  2. Targets for 1-year
  3. Server Naive AlphaFoldDB 90

CAMEO-3D: Server Pairwise Comparison 1-year Performance (2022-02-04 - 2023-01-28)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

Naive AlphaFoldDB 90 - Pairwise Comparison on common targets - dataset: 1-year [2022-02-04 - 2023-01-28]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
Naive AlphaFoldDB 90 - Reference
Naive AlphaFoldDB 100 135 133 0 0 -00:00:58 00:07:59 0.49 80.27 0.27 77.22 0.44 79.15 - - - - server100 False
PaFold 314 18 0 0 -70:38:34 00:03:36 3.43 79.71 1.57 76.78 3.24 84.77 - - - - server101 True
HeliXonAI 274 26 0 0 -75:07:09 00:02:19 -4.71 79.09 -5.14 75.25 0.40 89.87 - - - - server104 True
Robetta 315 18 0 0 -21:46:18 00:03:36 7.16 79.71 4.74 76.78 8.84 84.77 - - - - server11 True
Phyre2 -278 191 0 0 -01:35:52 00:07:16 34.46 79.52 27.52 76.56 28.76 80.70 - - - - server17 False
RoseTTAFold -218 176 0 0 -14:29:51 00:07:13 7.32 79.60 5.24 76.63 10.15 81.43 - - - - server19 False
SWISS-MODEL -307 201 0 0 --1:57:42 00:07:36 27.06 80.17 22.48 76.93 23.67 81.48 - - - - server20 False
RaptorX 351 11 0 0 -11:58:14 00:04:14 12.69 74.11 5.88 72.10 15.68 76.77 - - - - server22 True
SPARKS-X 413 0 0 0 - - - - - - - - - - - - server30 True
IntFOLD3-TS -299 203 0 0 -47:18:59 00:07:42 24.11 79.83 19.04 76.77 21.92 81.57 - - - - server33 False
NaiveBLAST -201 164 0 0 --1:52:59 00:07:30 38.24 81.03 33.76 77.41 32.40 80.82 - - - - server36 False
IntFOLD4-TS -264 187 0 0 -58:10:55 00:07:28 21.77 79.82 17.25 76.81 22.80 82.03 - - - - server58 False
PRIMO -109 150 0 0 -03:09:01 00:07:27 40.93 80.96 33.01 77.52 35.86 81.85 - - - - server61 False
PRIMO_BST_3D -21 127 0 0 -03:05:42 00:08:02 44.27 81.46 35.77 77.61 34.77 80.16 - - - - server62 False
PRIMO_HHS_3D 275 47 0 0 -03:17:17 00:08:14 37.81 76.10 31.84 75.22 14.74 73.61 - - - - server63 True
PRIMO_HHS_CL 238 65 0 0 -03:14:49 00:07:39 33.28 77.41 26.64 75.59 29.01 80.00 - - - - server64 True
PRIMO_BST_CL -97 149 0 0 -03:13:14 00:07:30 41.13 80.56 33.16 77.17 32.92 79.52 - - - - server65 False
IntFOLD5-TS -238 190 0 0 -33:10:57 00:08:11 21.59 80.00 16.67 76.92 18.71 81.34 - - - - server75 False
IntFOLD6-TS -266 192 0 0 -26:39:38 00:07:44 20.56 79.83 16.17 76.78 18.35 81.23 - - - - server90 False
BestSingleStructuralTemplate -240 182 0 0 -04:37:18 00:07:15 15.85 79.34 12.32 76.43 16.10 80.67 - - - - server999 False
Naive AlphaFoldDB 90 - model_1 per target comparison with the best: 1-year - [2022-02-04 - 2023-01-28]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best