1. 3D - Protein Structure Prediction
  2. Targets for 1-year
  3. Server SWISS-MODEL

CAMEO-3D: Server Pairwise Comparison 1-year Performance (2024-01-12 - 2025-01-04)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

SWISS-MODEL - Pairwise Comparison on common targets - dataset: 1-year [2024-01-12 - 2025-01-04]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
SWISS-MODEL - Reference
Naive AlphaFoldDB 100 321 158 140 0 -00:33:55 00:07:27 -0.31 82.62 -0.34 78.57 1.31 80.76 - - - - server100 False
PaFold 666 0 140 0 - - - - - - - - - - - - server101 True
HeliXonAI 666 0 140 0 - - - - - - - - - - - - server104 True
OpenComplex 14 294 140 0 -11:45:18 00:08:40 -6.26 78.48 -5.36 75.13 -5.07 76.94 - - - - server111 False
IntFOLD7 53 278 140 0 -39:12:56 00:08:30 0.20 78.24 -0.31 74.96 0.72 78.40 - - - - server113 False
Robetta 665 1 140 0 -45:13:42 00:38:04 37.08 85.91 25.00 78.25 - - - - - - server11 True
MultiDFold 666 0 140 0 - - - - - - - - - - - - server121 True
AIRFold 328 152 140 0 -38:29:05 00:09:44 -8.05 75.92 -6.82 73.32 -2.94 79.33 - - - - server127 False
Phyre2 12 296 140 0 -00:31:48 00:08:25 34.46 78.32 26.03 75.06 21.07 76.91 - - - - server17 False
RoseTTAFold 86 263 140 0 -05:02:05 00:08:45 6.68 78.41 4.47 75.09 10.39 76.18 - - - - server19 False
RaptorX 666 0 140 0 - - - - - - - - - - - - server22 True
SPARKS-X 666 0 140 0 - - - - - - - - - - - - server30 True
NaiveBLAST 103 242 140 0 --1:51:35 00:09:00 36.80 79.35 32.22 75.60 22.08 75.21 - - - - server36 False
PRIMO 666 0 140 0 - - - - - - - - - - - - server61 True
PRIMO_BST_3D 666 0 140 0 - - - - - - - - - - - - server62 True
PRIMO_HHS_3D 666 0 140 0 - - - - - - - - - - - - server63 True
PRIMO_HHS_CL 666 0 140 0 - - - - - - - - - - - - server64 True
PRIMO_BST_CL 666 0 140 0 - - - - - - - - - - - - server65 True
IntFOLD5-TS -3 303 140 0 -36:40:27 00:08:39 20.14 78.35 15.21 75.04 12.16 77.11 - - - - server75 False
IntFOLD6-TS -3 304 140 0 -29:41:06 00:08:39 19.17 78.38 14.66 75.06 13.16 77.16 - - - - server90 False
BestSingleStructuralTemplate 55 276 140 0 -05:28:57 00:08:36 14.67 78.12 11.08 74.83 12.48 77.43 - - - - server999 False
Naive AlphaFoldDB 90 160 236 140 0 -00:30:56 00:08:00 0.58 82.76 0.39 78.59 0.44 80.80 - - - - server99 False
SWISS-MODEL - model_1 per target comparison with the best: 1-year - [2024-01-12 - 2025-01-04]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best