1. 3D - Protein Structure Prediction
  2. Targets for 6-months
  3. Server SWISS-MODEL

CAMEO-3D: Server Pairwise Comparison 6-months Performance (2024-07-12 - 2025-01-04)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

SWISS-MODEL - Pairwise Comparison on common targets - dataset: 6-months [2024-07-12 - 2025-01-04]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
SWISS-MODEL - Reference
Naive AlphaFoldDB 100 150 167 65 0 -00:51:15 00:07:07 -0.86 86.62 -0.85 81.26 -0.20 86.64 - - - - server100 False
PaFold 317 0 65 0 - - - - - - - - - - - - server101 True
HeliXonAI 317 0 65 0 - - - - - - - - - - - - server104 True
OpenComplex 1 316 65 0 -05:51:40 00:07:43 -8.05 79.09 -6.85 75.31 -5.37 80.50 - - - - server111 False
IntFOLD7 32 285 65 0 -44:19:53 00:07:22 -1.69 78.85 -2.07 75.12 0.04 80.97 - - - - server113 False
Robetta 317 0 65 0 - - - - - - - - - - - - server11 True
MultiDFold 317 0 65 0 - - - - - - - - - - - - server121 True
AIRFold 95 222 65 0 -37:35:16 00:08:01 -9.08 78.47 -7.72 74.85 -4.87 81.48 - - - - server127 False
SAIS-Fold 14 303 65 0 -30:00:07 00:07:35 -6.52 78.80 -5.99 75.06 -4.94 80.16 - - - - server136 False
ZJUT-DeepSHFold 165 152 65 0 -60:43:52 00:08:33 -8.81 79.35 -7.71 75.49 -5.83 81.31 - - - - server137 False
Phyre2 8 309 65 0 -00:36:06 00:07:43 24.60 79.16 18.50 75.39 18.20 80.33 - - - - server17 False
RoseTTAFold 43 274 65 0 -05:30:12 00:07:25 4.76 78.85 3.05 75.18 12.11 81.53 - - - - server19 False
RaptorX 317 0 65 0 - - - - - - - - - - - - server22 True
SPARKS-X 317 0 65 0 - - - - - - - - - - - - server30 True
NaiveBLAST 48 269 65 0 --1:52:28 00:08:08 24.38 80.93 21.66 76.57 15.40 80.55 - - - - server36 False
PRIMO 317 0 65 0 - - - - - - - - - - - - server61 True
PRIMO_BST_3D 317 0 65 0 - - - - - - - - - - - - server62 True
PRIMO_HHS_3D 317 0 65 0 - - - - - - - - - - - - server63 True
PRIMO_HHS_CL 317 0 65 0 - - - - - - - - - - - - server64 True
PRIMO_BST_CL 317 0 65 0 - - - - - - - - - - - - server65 True
IntFOLD5-TS 0 317 65 0 -37:20:09 00:07:47 13.19 79.09 10.03 75.30 9.54 80.50 - - - - server75 False
IntFOLD6-TS 0 317 65 0 -30:11:54 00:07:47 12.69 79.09 9.47 75.30 10.08 80.50 - - - - server90 False
BestSingleStructuralTemplate 18 299 65 0 -05:37:39 00:07:39 7.08 78.68 5.28 74.94 5.64 80.63 - - - - server999 False
Naive AlphaFoldDB 90 91 226 65 0 -00:48:41 00:07:27 -0.63 86.04 -0.54 80.87 -0.28 84.37 - - - - server99 False
SWISS-MODEL - model_1 per target comparison with the best: 6-months - [2024-07-12 - 2025-01-04]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best