1. 3D - Protein Structure Prediction
  2. Targets for 1-year
  3. Server Naive AlphaFoldDB 100

CAMEO-3D: Server Pairwise Comparison 1-year Performance (2024-01-12 - 2025-01-04)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

Naive AlphaFoldDB 100 - Pairwise Comparison on common targets - dataset: 1-year [2024-01-12 - 2025-01-04]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
Naive AlphaFoldDB 100 - Reference
PaFold 345 0 0 0 - - - - - - - - - - - - server101 True
HeliXonAI 345 0 0 0 - - - - - - - - - - - - server104 True
OpenComplex -307 152 0 0 -11:13:13 00:41:35 -1.00 83.47 -0.97 79.32 -1.78 79.15 - - - - server111 False
IntFOLD7 -268 145 0 0 -38:53:24 00:38:51 4.53 82.95 3.42 78.95 2.24 80.76 - - - - server113 False
Robetta 344 1 0 0 -51:52:53 02:02:00 37.09 85.93 25.01 78.26 - - - - - - server11 True
MultiDFold 345 0 0 0 - - - - - - - - - - - - server121 True
AIRFold 7 73 0 0 -37:44:08 00:50:17 -0.76 82.44 -1.03 78.62 0.41 81.06 - - - - server127 False
Phyre2 -309 155 0 0 -00:00:51 00:40:53 40.15 82.95 30.94 78.91 27.21 80.17 - - - - server17 False
RoseTTAFold -235 141 0 0 -03:58:04 00:41:01 11.70 83.51 8.75 79.36 13.88 80.18 - - - - server19 False
SWISS-MODEL -321 158 0 0 --1:26:05 00:41:22 0.31 82.93 0.34 78.91 -1.31 79.44 - - - - server20 False
RaptorX 345 0 0 0 - - - - - - - - - - - - server22 True
SPARKS-X 345 0 0 0 - - - - - - - - - - - - server30 True
NaiveBLAST -218 123 0 0 --1:19:39 00:40:56 43.79 83.14 38.42 78.88 27.03 78.36 - - - - server36 False
PRIMO 345 0 0 0 - - - - - - - - - - - - server61 True
PRIMO_BST_3D 345 0 0 0 - - - - - - - - - - - - server62 True
PRIMO_HHS_3D 345 0 0 0 - - - - - - - - - - - - server63 True
PRIMO_HHS_CL 345 0 0 0 - - - - - - - - - - - - server64 True
PRIMO_BST_CL 345 0 0 0 - - - - - - - - - - - - server65 True
IntFOLD5-TS -324 157 0 0 -36:38:50 00:40:59 26.23 82.90 20.32 78.89 16.73 79.39 - - - - server75 False
IntFOLD6-TS -324 158 0 0 -29:31:54 00:40:54 24.84 82.93 19.64 78.91 17.56 79.44 - - - - server90 False
BestSingleStructuralTemplate -266 143 0 0 -05:04:22 00:41:41 22.06 83.09 17.19 79.01 16.02 79.67 - - - - server999 False
Naive AlphaFoldDB 90 -161 158 0 0 --1:58:54 00:40:48 0.08 82.93 0.08 78.91 -0.77 79.44 - - - - server99 False
Naive AlphaFoldDB 100 - model_1 per target comparison with the best: 1-year - [2024-01-12 - 2025-01-04]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best