1. 3D - Protein Structure Prediction
  2. Targets for 6-months
  3. Server Naive AlphaFoldDB 100

CAMEO-3D: Server Pairwise Comparison 6-months Performance (2024-07-12 - 2025-01-04)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

Naive AlphaFoldDB 100 - Pairwise Comparison on common targets - dataset: 6-months [2024-07-12 - 2025-01-04]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
Naive AlphaFoldDB 100 - Reference
PaFold 167 0 0 0 - - - - - - - - - - - - server101 True
HeliXonAI 167 0 0 0 - - - - - - - - - - - - server104 True
OpenComplex -149 167 0 0 -05:23:47 00:57:07 -1.03 87.48 -1.01 82.12 -0.03 86.84 - - - - server111 False
IntFOLD7 -118 145 0 0 -44:47:28 00:54:17 4.83 87.35 3.67 82.06 3.62 86.80 - - - - server113 False
Robetta 167 0 0 0 - - - - - - - - - - - - server11 True
MultiDFold 167 0 0 0 - - - - - - - - - - - - server121 True
AIRFold -55 114 0 0 -37:41:56 00:55:49 -1.25 87.28 -1.28 81.98 0.43 87.13 - - - - server127 False
SAIS-Fold -136 155 0 0 -27:29:21 00:57:11 0.11 87.28 -0.29 81.98 0.21 86.62 - - - - server136 False
ZJUT-DeepSHFold 15 76 0 0 -58:38:22 00:56:31 -1.04 88.38 -1.20 82.81 0.12 83.90 - - - - server137 False
Phyre2 -142 164 0 0 --1:49:12 00:57:13 29.46 87.38 22.80 82.04 20.15 86.64 - - - - server17 False
RoseTTAFold -107 150 0 0 -03:32:30 00:56:38 10.94 87.28 8.68 81.98 16.31 86.63 - - - - server19 False
SWISS-MODEL -150 167 0 0 --1:08:45 00:58:22 0.86 87.48 0.85 82.12 0.20 86.84 - - - - server20 False
RaptorX 167 0 0 0 - - - - - - - - - - - - server22 True
SPARKS-X 167 0 0 0 - - - - - - - - - - - - server30 True
NaiveBLAST -102 146 0 0 --1:03:43 00:56:52 29.92 87.77 26.41 82.21 18.68 86.49 - - - - server36 False
PRIMO 167 0 0 0 - - - - - - - - - - - - server61 True
PRIMO_BST_3D 167 0 0 0 - - - - - - - - - - - - server62 True
PRIMO_HHS_3D 167 0 0 0 - - - - - - - - - - - - server63 True
PRIMO_HHS_CL 167 0 0 0 - - - - - - - - - - - - server64 True
PRIMO_BST_CL 167 0 0 0 - - - - - - - - - - - - server65 True
IntFOLD5-TS -150 167 0 0 -37:44:28 00:57:07 19.92 87.48 16.29 82.12 12.58 86.84 - - - - server75 False
IntFOLD6-TS -150 167 0 0 -30:20:12 00:57:07 19.37 87.48 15.60 82.12 13.04 86.84 - - - - server90 False
BestSingleStructuralTemplate -132 155 0 0 -05:15:26 00:56:24 15.27 87.28 12.21 81.97 8.21 87.07 - - - - server999 False
Naive AlphaFoldDB 90 -59 167 0 0 --1:58:30 00:57:07 0.10 87.48 0.13 82.12 0.20 86.84 - - - - server99 False
Naive AlphaFoldDB 100 - model_1 per target comparison with the best: 6-months - [2024-07-12 - 2025-01-04]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best