1. 3D - Protein Structure Prediction
  2. Targets for 6-months
  3. Server RaptorX

CAMEO-3D: Server Pairwise Comparison 6-months Performance (2021-10-22 - 2022-04-16)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

RaptorX - Pairwise Comparison on common targets - dataset: 6-months [2021-10-22 - 2022-04-16]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
RaptorX - Reference
Naive AlphaFoldDB 100 107 35 0 0 --12:20:27 11:40:01 -17.42 64.29 -12.39 66.09 -16.08 61.18 - - - - server100 True
PaFold -134 166 0 0 -56:12:36 12:14:38 -6.73 67.21 -5.15 66.91 -4.70 63.56 - - - - server101 False
Robetta -106 151 0 0 --1:42:03 12:03:08 -5.72 67.11 -4.53 66.95 -4.24 63.29 - - - - server11 False
Phyre2 -189 181 0 0 --11:51:56 11:53:46 9.83 66.96 8.52 66.76 3.06 63.79 - - - - server17 False
RoseTTAFold -184 183 0 0 --4:58:07 11:53:06 -7.12 66.87 -5.36 66.84 -2.49 64.13 - - - - server19 False
SWISS-MODEL -191 183 0 0 --13:58:42 12:07:35 2.13 67.08 3.17 66.81 0.08 64.13 - - - - server20 False
SPARKS-X 185 0 0 0 - - - - - - - - - - - - server30 True
IntFOLD3-TS -149 161 0 0 -28:49:54 12:10:31 1.32 67.53 1.96 67.31 0.14 64.48 - - - - server33 False
NaiveBLAST -135 159 0 0 --12:18:25 11:42:32 10.92 68.72 11.70 67.74 7.01 63.83 - - - - server36 False
IntFOLD4-TS -136 155 0 0 -42:59:43 11:24:38 -0.61 67.23 0.04 67.14 -4.11 64.50 - - - - server58 False
PRIMO -56 118 0 0 --8:50:24 10:17:50 12.22 66.15 10.79 66.46 11.17 59.19 - - - - server61 False
PRIMO_BST_3D -7 90 0 0 --7:24:11 09:43:13 16.76 64.84 14.46 65.27 17.60 56.74 - - - - server62 False
PRIMO_HHS_3D 118 30 0 0 --6:09:10 08:49:40 17.31 61.35 14.98 63.94 7.71 56.47 - - - - server63 True
PRIMO_HHS_CL 106 35 0 0 --6:06:39 09:06:47 9.77 63.05 8.37 65.38 2.55 68.33 - - - - server64 True
PRIMO_BST_CL -42 109 0 0 --7:08:47 09:55:20 13.53 66.20 11.57 66.31 12.38 58.85 - - - - server65 False
IntFOLD5-TS -122 145 0 0 -22:45:51 11:22:53 -1.15 67.39 -0.67 67.36 -4.53 64.13 - - - - server75 False
IntFOLD6-TS -153 162 0 0 -19:21:01 11:57:38 -1.53 67.32 -0.69 67.16 -5.28 64.76 - - - - server90 False
pureAF2_orig -186 182 0 0 -25:43:40 11:37:38 -19.41 67.08 -14.96 66.96 -16.07 64.49 - - - - server96 False
pureAF2_notemp -190 182 0 0 -30:34:32 11:37:38 -19.18 67.08 -14.89 66.96 -16.08 64.49 - - - - server97 False
ZlxFold -161 182 0 0 -50:16:52 11:37:38 -18.28 67.08 -13.86 66.96 -15.29 64.49 - - - - server98 False
BestSingleStructuralTemplate -168 173 0 0 --8:45:46 11:38:52 -4.85 67.31 -3.38 66.94 -6.38 64.33 - - - - server999 False
Naive AlphaFoldDB 90 69 48 0 0 --12:24:44 11:36:54 -14.67 64.46 -9.83 66.60 -16.06 63.74 - - - - server99 False
RaptorX - model_1 per target comparison with the best: 6-months - [2021-10-22 - 2022-04-16]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best