1. 3D - Protein Structure Prediction
  2. Targets for 6-months
  3. Server SWISS-MODEL

CAMEO-3D: Server Pairwise Comparison 6-months Performance (2024-08-16 - 2025-02-08)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

SWISS-MODEL - Pairwise Comparison on common targets - dataset: 6-months [2024-08-16 - 2025-02-08]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
SWISS-MODEL - Reference
Naive AlphaFoldDB 100 145 65 63 0 -00:51:10 00:07:50 -0.20 82.52 -0.41 78.15 -0.76 74.91 - - - - server100 False
PaFold 294 0 63 0 - - - - - - - - - - - - server101 True
HeliXonAI 294 0 63 0 - - - - - - - - - - - - server104 True
OpenComplex 2 128 63 0 -08:46:44 00:07:35 -7.72 76.55 -6.68 73.66 -7.23 70.73 - - - - server111 False
IntFOLD7 32 115 63 0 -45:24:25 00:07:10 -0.91 76.33 -1.37 73.50 -0.13 72.41 - - - - server113 False
Robetta 294 0 63 0 - - - - - - - - - - - - server11 True
MultiDFold 294 0 63 0 - - - - - - - - - - - - server121 True
AIRFold 144 67 63 0 -36:45:30 00:07:52 -9.08 74.68 -7.88 72.53 -5.41 74.10 - - - - server127 False
SAIS-Fold 41 111 63 0 -33:30:28 00:07:12 -6.63 76.57 -6.06 73.72 -7.68 72.95 - - - - server136 False
ZJUT-DeepSHFold 215 28 63 0 -73:36:54 00:08:25 -9.24 74.01 -8.26 72.04 -8.45 67.22 - - - - server137 False
Phyre2 8 125 63 0 -00:42:56 00:07:35 30.66 76.31 22.77 73.52 17.94 70.42 - - - - server17 False
RoseTTAFold 15 122 63 0 -05:57:24 00:07:16 4.79 76.63 3.00 73.73 8.00 70.50 - - - - server19 False
RaptorX 294 0 63 0 - - - - - - - - - - - - server22 True
SPARKS-X 294 0 63 0 - - - - - - - - - - - - server30 True
NaiveBLAST 42 109 63 0 --1:52:39 00:07:57 35.00 77.25 30.47 73.88 20.57 69.68 - - - - server36 False
PRIMO 294 0 63 0 - - - - - - - - - - - - server61 True
PRIMO_BST_3D 294 0 63 0 - - - - - - - - - - - - server62 True
PRIMO_HHS_3D 294 0 63 0 - - - - - - - - - - - - server63 True
PRIMO_HHS_CL 294 0 63 0 - - - - - - - - - - - - server64 True
PRIMO_BST_CL 294 0 63 0 - - - - - - - - - - - - server65 True
IntFOLD5-TS 0 128 63 0 -36:59:59 00:07:39 16.48 76.55 12.32 73.66 10.78 70.73 - - - - server75 False
IntFOLD6-TS 0 128 63 0 -30:08:20 00:07:39 16.20 76.55 12.23 73.66 11.10 70.73 - - - - server90 False
BestSingleStructuralTemplate 17 120 63 0 -05:45:57 00:07:31 10.70 76.61 8.23 73.61 7.92 70.58 - - - - server999 False
Naive AlphaFoldDB 90 79 94 63 0 -00:48:22 00:07:40 0.07 82.19 -0.01 78.01 0.16 75.86 - - - - server99 False
SWISS-MODEL - model_1 per target comparison with the best: 6-months - [2024-08-16 - 2025-02-08]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best