1. 3D - Protein Structure Prediction
  2. Targets for 6-months
  3. Server Phyre2

CAMEO-3D: Server Pairwise Comparison 6-months Performance (2024-07-12 - 2025-01-04)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

Phyre2 - Pairwise Comparison on common targets - dataset: 6-months [2024-07-12 - 2025-01-04]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
Phyre2 - Reference
Naive AlphaFoldDB 100 142 69 0 0 -00:10:48 00:46:25 -41.08 42.46 -31.16 48.05 -29.80 48.88 - - - - server100 False
PaFold 309 0 0 0 - - - - - - - - - - - - server101 True
HeliXonAI 309 0 0 0 - - - - - - - - - - - - server104 True
OpenComplex -7 137 0 0 -05:33:20 00:42:02 -42.69 42.04 -32.57 47.99 -30.15 51.67 - - - - server111 False
IntFOLD7 24 125 0 0 -42:50:23 00:37:03 -35.58 40.63 -27.10 46.97 -24.00 52.18 - - - - server113 False
Robetta 309 0 0 0 - - - - - - - - - - - - server11 True
MultiDFold 309 0 0 0 - - - - - - - - - - - - server121 True
AIRFold 87 97 0 0 -36:27:46 00:36:56 -45.28 39.33 -34.41 46.39 -34.29 46.44 - - - - server127 False
SAIS-Fold 6 131 0 0 -29:12:51 00:41:43 -41.31 42.25 -31.80 48.16 -28.38 52.56 - - - - server136 False
ZJUT-DeepSHFold 157 60 0 0 -60:14:03 00:38:13 -47.76 38.01 -36.43 45.17 -41.80 38.89 - - - - server137 False
RoseTTAFold 35 119 0 0 -04:48:26 00:41:31 -28.35 43.07 -21.56 48.92 -12.53 51.42 - - - - server19 False
SWISS-MODEL -8 137 0 0 --1:23:54 00:43:49 -33.51 42.04 -24.89 47.99 -22.47 51.67 - - - - server20 False
RaptorX 309 0 0 0 - - - - - - - - - - - - server22 True
SPARKS-X 309 0 0 0 - - - - - - - - - - - - server30 True
NaiveBLAST 40 109 0 0 --1:16:27 00:44:08 4.33 44.50 8.05 49.58 2.93 53.31 - - - - server36 False
PRIMO 309 0 0 0 - - - - - - - - - - - - server61 True
PRIMO_BST_3D 309 0 0 0 - - - - - - - - - - - - server62 True
PRIMO_HHS_3D 309 0 0 0 - - - - - - - - - - - - server63 True
PRIMO_HHS_CL 309 0 0 0 - - - - - - - - - - - - server64 True
PRIMO_BST_CL 309 0 0 0 - - - - - - - - - - - - server65 True
IntFOLD5-TS -8 137 0 0 -36:25:57 00:42:00 -15.30 42.04 -11.47 47.99 -9.85 51.67 - - - - server75 False
IntFOLD6-TS -8 137 0 0 -29:14:40 00:42:00 -15.83 42.04 -11.86 47.99 -9.61 51.67 - - - - server90 False
BestSingleStructuralTemplate 10 129 0 0 -05:01:53 00:40:15 -21.18 42.35 -15.38 48.31 -13.61 51.16 - - - - server999 False
Naive AlphaFoldDB 90 83 97 0 0 -00:06:32 00:48:44 -39.78 43.14 -30.09 48.60 -26.37 52.22 - - - - server99 False
Phyre2 - model_1 per target comparison with the best: 6-months - [2024-07-12 - 2025-01-04]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best