1. 3D - Protein Structure Prediction
  2. Targets for 6-months
  3. Server ZJUT-DeepSHFold

CAMEO-3D: Server Pairwise Comparison 6-months Performance (2024-09-13 - 2025-03-08)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

ZJUT-DeepSHFold - Pairwise Comparison on common targets - dataset: 6-months [2024-09-13 - 2025-03-08]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
ZJUT-DeepSHFold - Reference
Naive AlphaFoldDB 100 -90 13 0 0 --73:35:22 73:21:38 1.38 85.86 1.44 81.61 -1.41 78.05 - - - - server100 False
PaFold 67 0 0 0 - - - - - - - - - - - - server101 True
HeliXonAI 67 0 0 0 - - - - - - - - - - - - server104 True
OpenComplex -231 23 0 0 --69:50:15 73:24:38 0.26 85.44 0.23 81.42 -0.55 80.14 - - - - server111 False
IntFOLD7 -204 19 0 0 --32:48:42 73:23:30 9.51 85.47 6.65 81.42 12.60 87.30 - - - - server113 False
Robetta 67 0 0 0 - - - - - - - - - - - - server11 True
MultiDFold 67 0 0 0 - - - - - - - - - - - - server121 True
AIRFold -37 16 0 0 --39:00:07 74:27:29 1.27 86.41 0.83 82.52 1.03 87.44 - - - - server127 False
SAIS-Fold -140 17 0 0 --34:35:01 72:38:11 1.17 84.14 0.54 80.42 -2.10 80.35 - - - - server136 False
Phyre2 -227 23 0 0 --73:19:56 73:24:38 44.29 85.44 33.81 81.42 45.80 80.14 - - - - server17 False
RoseTTAFold -195 23 0 0 --72:43:10 73:16:20 13.54 85.44 10.86 81.42 17.15 80.14 - - - - server19 False
SWISS-MODEL -233 23 0 0 --74:46:00 73:22:52 10.91 85.44 9.67 81.42 9.27 80.14 - - - - server20 False
RaptorX 67 0 0 0 - - - - - - - - - - - - server22 True
SPARKS-X 67 0 0 0 - - - - - - - - - - - - server30 True
NaiveBLAST -190 19 0 0 --74:49:00 73:11:42 44.37 85.05 38.81 81.19 40.16 79.06 - - - - server36 False
PRIMO 67 0 0 0 - - - - - - - - - - - - server61 True
PRIMO_BST_3D 67 0 0 0 - - - - - - - - - - - - server62 True
PRIMO_HHS_3D 67 0 0 0 - - - - - - - - - - - - server63 True
PRIMO_HHS_CL 67 0 0 0 - - - - - - - - - - - - server64 True
PRIMO_BST_CL 67 0 0 0 - - - - - - - - - - - - server65 True
IntFOLD5-TS -228 23 0 0 --37:05:08 73:24:38 26.47 85.44 20.95 81.42 25.57 80.14 - - - - server75 False
IntFOLD6-TS -234 23 0 0 --45:32:59 73:24:38 26.38 85.44 20.86 81.42 25.57 80.14 - - - - server90 False
BestSingleStructuralTemplate -215 23 0 0 --67:15:22 73:02:09 18.64 85.44 15.89 81.42 18.74 80.14 - - - - server999 False
Naive AlphaFoldDB 90 -154 16 0 0 --73:34:48 73:20:26 3.06 86.16 2.66 81.85 -1.03 78.05 - - - - server99 False
ZJUT-DeepSHFold - model_1 per target comparison with the best: 6-months - [2024-09-13 - 2025-03-08]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best