1. 3D - Protein Structure Prediction
  2. Targets for 6-months
  3. Server AIRFold

CAMEO-3D: Server Pairwise Comparison 6-months Performance (2024-09-13 - 2025-03-08)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

AIRFold - Pairwise Comparison on common targets - dataset: 6-months [2024-09-13 - 2025-03-08]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
AIRFold - Reference
Naive AlphaFoldDB 100 -53 61 0 0 --33:53:18 33:01:57 1.69 88.26 1.66 83.19 0.12 90.06 - - - - server100 False
PaFold 104 0 0 0 - - - - - - - - - - - - server101 True
HeliXonAI 104 0 0 0 - - - - - - - - - - - - server104 True
OpenComplex -194 104 0 0 --26:05:05 30:28:14 -0.09 87.23 -0.03 82.42 -0.12 89.20 - - - - server111 False
IntFOLD7 -167 91 0 0 -16:57:25 29:30:55 6.82 86.87 5.20 82.22 6.44 88.51 - - - - server113 False
Robetta 104 0 0 0 - - - - - - - - - - - - server11 True
MultiDFold 104 0 0 0 - - - - - - - - - - - - server121 True
SAIS-Fold -103 90 0 0 --3:11:47 29:30:54 1.85 86.90 1.15 82.19 0.21 89.30 - - - - server136 False
ZJUT-DeepSHFold 37 48 0 0 -38:59:53 35:27:36 -1.04 87.99 -0.98 83.06 -0.20 90.06 - - - - server137 True
Phyre2 -190 103 0 0 --30:11:46 30:31:50 33.85 87.19 26.03 82.40 29.78 89.20 - - - - server17 False
RoseTTAFold -158 97 0 0 --28:28:48 29:43:38 13.09 87.07 10.24 82.33 18.42 88.64 - - - - server19 False
SWISS-MODEL -196 104 0 0 --32:23:32 31:44:23 9.36 87.23 8.06 82.42 4.73 89.20 - - - - server20 False
RaptorX 104 0 0 0 - - - - - - - - - - - - server22 True
SPARKS-X 104 0 0 0 - - - - - - - - - - - - server30 True
NaiveBLAST -153 90 0 0 --31:47:38 30:13:00 32.02 87.60 28.39 82.59 27.65 88.80 - - - - server36 False
PRIMO 104 0 0 0 - - - - - - - - - - - - server61 True
PRIMO_BST_3D 104 0 0 0 - - - - - - - - - - - - server62 True
PRIMO_HHS_3D 104 0 0 0 - - - - - - - - - - - - server63 True
PRIMO_HHS_CL 104 0 0 0 - - - - - - - - - - - - server64 True
PRIMO_BST_CL 104 0 0 0 - - - - - - - - - - - - server65 True
IntFOLD5-TS -191 104 0 0 -06:53:46 30:28:14 21.86 87.23 17.21 82.42 15.67 89.20 - - - - server75 False
IntFOLD6-TS -197 104 0 0 --1:07:56 30:28:14 21.86 87.23 16.94 82.42 17.35 89.20 - - - - server90 False
BestSingleStructuralTemplate -178 94 0 0 --24:26:29 29:22:24 16.86 87.04 13.77 82.30 16.04 89.08 - - - - server999 False
Naive AlphaFoldDB 90 -117 79 0 0 --32:54:06 31:59:32 2.04 87.92 2.04 82.98 3.54 90.85 - - - - server99 False
AIRFold - model_1 per target comparison with the best: 6-months - [2024-09-13 - 2025-03-08]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best