1. 3D - Protein Structure Prediction
  2. Targets for 1-year
  3. Server NaiveBLAST

CAMEO-3D: Server Pairwise Comparison 1-year Performance (2024-01-12 - 2025-01-04)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

NaiveBLAST - Pairwise Comparison on common targets - dataset: 1-year [2024-01-12 - 2025-01-04]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
NaiveBLAST - Reference
Naive AlphaFoldDB 100 218 123 0 0 -00:40:21 00:00:35 -43.79 39.35 -38.42 40.46 -27.03 51.33 - - - - server100 False
PaFold 563 0 0 0 - - - - - - - - - - - - server101 True
HeliXonAI 563 0 0 0 - - - - - - - - - - - - server104 True
OpenComplex -89 233 0 0 -12:01:52 00:00:34 -43.19 42.04 -37.84 42.90 -27.71 52.84 - - - - server111 False
IntFOLD7 -50 220 0 0 -40:13:44 00:00:33 -36.33 42.32 -32.26 43.20 -22.87 54.23 - - - - server113 False
Robetta 562 0 0 0 - - - - - - - - - - - - server11 True
MultiDFold 563 0 0 0 - - - - - - - - - - - - server121 True
AIRFold 225 118 0 0 -38:29:03 00:00:37 -44.63 40.08 -39.08 41.46 -31.25 49.69 - - - - server127 False
Phyre2 -91 236 0 0 -00:39:50 00:00:34 -4.37 42.66 -7.93 43.48 -3.92 53.78 - - - - server17 False
RoseTTAFold -17 211 0 0 -04:56:23 00:00:34 -29.93 43.06 -27.49 43.71 -12.77 52.62 - - - - server19 False
SWISS-MODEL -103 242 0 0 -00:08:25 00:00:35 -36.80 42.54 -32.22 43.38 -22.08 53.13 - - - - server20 False
RaptorX 563 0 0 0 - - - - - - - - - - - - server22 True
SPARKS-X 563 0 0 0 - - - - - - - - - - - - server30 True
PRIMO 563 0 0 0 - - - - - - - - - - - - server61 True
PRIMO_BST_3D 563 0 0 0 - - - - - - - - - - - - server62 True
PRIMO_HHS_3D 563 0 0 0 - - - - - - - - - - - - server63 True
PRIMO_HHS_CL 563 0 0 0 - - - - - - - - - - - - server64 True
PRIMO_BST_CL 563 0 0 0 - - - - - - - - - - - - server65 True
IntFOLD5-TS -106 242 0 0 -37:03:19 00:00:34 -17.86 42.54 -17.64 43.38 -12.22 53.13 - - - - server75 False
IntFOLD6-TS -106 242 0 0 -30:01:57 00:00:34 -18.63 42.54 -18.12 43.38 -11.70 53.13 - - - - server90 False
BestSingleStructuralTemplate -48 220 0 0 -05:39:02 00:00:33 -22.35 42.36 -21.22 43.34 -11.84 53.68 - - - - server999 False
Naive AlphaFoldDB 90 57 186 0 0 -00:38:04 00:00:35 -41.76 40.59 -36.59 41.55 -25.15 53.88 - - - - server99 False
NaiveBLAST - model_1 per target comparison with the best: 1-year - [2024-01-12 - 2025-01-04]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best