1. 3D - Protein Structure Prediction
  2. Targets for 1-year
  3. Server SWISS-MODEL

CAMEO-3D: Server Pairwise Comparison 1-year Performance (2024-02-16 - 2025-02-08)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

SWISS-MODEL - Pairwise Comparison on common targets - dataset: 1-year [2024-02-16 - 2025-02-08]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
SWISS-MODEL - Reference
Naive AlphaFoldDB 100 321 147 132 0 -00:39:24 00:07:33 -0.11 82.50 -0.26 78.44 1.19 78.67 - - - - server100 False
PaFold 641 0 132 0 - - - - - - - - - - - - server101 True
HeliXonAI 641 0 132 0 - - - - - - - - - - - - server104 True
OpenComplex 13 281 132 0 -11:24:14 00:08:44 -6.30 78.09 -5.42 74.87 -4.50 76.00 - - - - server111 False
IntFOLD7 54 261 132 0 -40:55:32 00:08:30 -0.01 77.72 -0.54 74.61 1.01 77.19 - - - - server113 False
Robetta 640 1 132 0 -45:13:42 00:38:04 37.08 85.91 25.00 78.25 - - - - - - server11 True
MultiDFold 641 0 132 0 - - - - - - - - - - - - server121 True
AIRFold 303 152 132 0 -38:29:05 00:09:44 -8.05 75.92 -6.82 73.32 -2.94 79.33 - - - - server127 False
Phyre2 11 281 132 0 -00:34:18 00:08:27 33.40 77.88 25.21 74.76 21.18 75.79 - - - - server17 False
RoseTTAFold 88 246 132 0 -05:09:39 00:08:44 6.34 77.94 4.15 74.79 11.16 75.66 - - - - server19 False
RaptorX 641 0 132 0 - - - - - - - - - - - - server22 True
SPARKS-X 641 0 132 0 - - - - - - - - - - - - server30 True
NaiveBLAST 92 231 132 0 --1:51:37 00:08:58 36.14 78.92 31.55 75.29 21.15 74.13 - - - - server36 False
PRIMO 641 0 132 0 - - - - - - - - - - - - server61 True
PRIMO_BST_3D 641 0 132 0 - - - - - - - - - - - - server62 True
PRIMO_HHS_3D 641 0 132 0 - - - - - - - - - - - - server63 True
PRIMO_HHS_CL 641 0 132 0 - - - - - - - - - - - - server64 True
PRIMO_BST_CL 641 0 132 0 - - - - - - - - - - - - server65 True
IntFOLD5-TS -2 287 132 0 -36:38:31 00:08:42 19.31 77.89 14.53 74.72 12.32 76.03 - - - - server75 False
IntFOLD6-TS -3 288 132 0 -29:43:07 00:08:41 18.68 77.92 14.22 74.74 13.57 76.10 - - - - server90 False
BestSingleStructuralTemplate 43 263 132 0 -05:35:38 00:08:43 13.86 77.79 10.48 74.59 11.63 76.32 - - - - server999 False
Naive AlphaFoldDB 90 167 220 132 0 -00:36:19 00:08:02 0.77 82.60 0.50 78.45 0.44 79.82 - - - - server99 False
SWISS-MODEL - model_1 per target comparison with the best: 1-year - [2024-02-16 - 2025-02-08]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best