CAMEO-3D: Server Pairwise Comparison 1-week Performance (2025-03-08)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

Robetta - Pairwise Comparison on common targets - dataset: 1-week [2025-03-08]

Server Name	Targets modeled		Oligo-Targets modeled		Avg. Response Time (hh:mm:ss)		Avg. lDDT		Avg. CAD-score		Avg. lDDT-BS		Avg. QS-score		Avg. MM-align
Server Name	Dif.	Com.	Dif.	Com.	Dif.	Ref	Dif.	Ref.	Dif.	Ref.	Dif.	Ref.	Dif.	Ref.	Dif.	Ref.
Robetta - Reference

Server Name	Targets modeled		Oligo-Targets modeled		Avg. Response Time (hh:mm:ss)		Avg. lDDT		Avg. CAD-score		Avg. lDDT-BS		Avg. QS-score		Avg. MM-align
Server Name	Dif.	Com.	Dif.	Com.	Dif.	Ref	Dif.	Ref.	Dif.	Ref.	Dif.	Ref.	Dif.	Ref.	Dif.	Ref.
Robetta - Reference
Naive AlphaFoldDB 100	-7	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
PaFold	0	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
HeliXonAI	0	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
OpenComplex	-13	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
IntFOLD7	-14	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
MultiDFold	0	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
AIRFold	0	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
SAIS-Fold	0	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
ZJUT-DeepSHFold	0	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
Phyre2	-13	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
RoseTTAFold	-14	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
SWISS-MODEL	-14	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
RaptorX	0	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
SPARKS-X	0	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
NaiveBLAST	-10	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
PRIMO	0	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
PRIMO_BST_3D	0	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
PRIMO_HHS_3D	0	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
PRIMO_HHS_CL	0	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
PRIMO_BST_CL	0	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
IntFOLD5-TS	-14	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
IntFOLD6-TS	-14	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
BestSingleStructuralTemplate	-12	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-
Naive AlphaFoldDB 90	-11	0	0	0	-	-	-	-	-	-	-	-	-	-	-	-



Naive AlphaFoldDB 100
PaFold
HeliXonAI
OpenComplex
IntFOLD7
MultiDFold
AIRFold
SAIS-Fold
ZJUT-DeepSHFold
Phyre2
RoseTTAFold
SWISS-MODEL
RaptorX
SPARKS-X
NaiveBLAST
PRIMO
PRIMO_BST_3D
PRIMO_HHS_3D
PRIMO_HHS_CL
PRIMO_BST_CL
IntFOLD5-TS
IntFOLD6-TS
BestSingleStructuralTemplate
Naive AlphaFoldDB 90

Robetta - model_1 per target comparison with the best: 1-week - [2025-03-08]

Target	ref. PDB	lDDT			CAD-score			lDDT-BS			QS-score			MM-align			Difficulty
Target	ref. PDB	Diff	Ref	Best	Diff	Ref	Best	Diff	Ref	Best	Diff	Ref	Best	Diff	Ref	Best	Difficulty
2025-03-08_00000256_1	9gpi[D]	-	86.12	OpenComplex	-	80.34	OpenComplex	-	-	-	-	0.00	SWISS-MODEL	-	0.46	SWISS-MODEL	Medium
2025-03-08_00000244_1	9fiz[A]	-	84.01	IntFOLD7	-	79.35	IntFOLD7	-	-	-	-	0.52	SWISS-MODEL	-	0.82	SWISS-MODEL	Medium
2025-03-08_00000242_1	9fhk[B]	-	84.78	IntFOLD7	-	80.01	IntFOLD7	-	-	-	-	0.56	SWISS-MODEL	-	0.80	SWISS-MODEL	Medium
2025-03-08_00000217_1	9ehu[A]	-	77.36	OpenComplex	-	74.27	OpenComplex	-	-	-	-	-	-	-	-	-	Medium
2025-03-08_00000189_1	9ckx[A]	-	76.42	IntFOLD7	-	76.10	IntFOLD7	-	-	-	-	-	-	-	-	-	Medium
2025-03-08_00000098_1	8zwz[A]	-	77.97	OpenComplex	-	73.55	OpenComplex	-	-	-	-	-	-	-	-	-	Medium
2025-03-08_00000049_3	8xuf[C]	-	81.88	OpenComplex	-	79.84	OpenComplex	-	98.99	IntFOLD7	-	-	-	-	-	-	Medium
2025-03-08_00000027_1	8s7a[A]	-	77.66	IntFOLD7	-	75.38	IntFOLD7	-	-	-	-	0.47	SWISS-MODEL	-	0.69	SWISS-MODEL	Medium
2025-03-08_00000005_1	8qce[B]	-	91.06	IntFOLD7	-	84.66	OpenComplex	-	95.28	Naive AlphaFoldDB 90	-	-	-	-	-	-	Medium



2025-03-08_00000256_1
2025-03-08_00000244_1
2025-03-08_00000242_1
2025-03-08_00000217_1
2025-03-08_00000189_1
2025-03-08_00000098_1
2025-03-08_00000049_3
2025-03-08_00000027_1
2025-03-08_00000005_1