1. 3D - Protein Structure Prediction
  2. Targets for 1-month
  3. Server Naive AlphaFoldDB 90

CAMEO-3D: Server Pairwise Comparison 1-month Performance (2024-12-13 - 2025-01-04)

The pairwise comparison is showing the average differences of the reference with all the other servers, each on a common data subset. It is misleading to compare further servers among each other, without selecting a new reference as for each server pair the common subset may differ. Numbers in green denote scores where the reference server is better, numbers in red where another server was outperforming the reference server.

Naive AlphaFoldDB 90 - Pairwise Comparison on common targets - dataset: 1-month [2024-12-13 - 2025-01-04]
Server Name
Targets
modeled		 Oligo-Targets
modeled		 Avg. Response Time
(hh:mm:ss)		 Avg.
lDDT 		Avg.
CAD-score 		Avg.
lDDT-BS 		Avg.
QS-score 		Avg.
MM-align
Dif. Com. Dif. Com. Dif. Ref Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref. Dif. Ref.
Naive AlphaFoldDB 90 - Reference
Naive AlphaFoldDB 100 10 19 0 0 -00:00:35 00:54:47 -0.09 88.76 -0.14 82.74 -0.55 90.56 - - - - server100 False
PaFold 29 0 0 0 - - - - - - - - - - - - server101 True
HeliXonAI 29 0 0 0 - - - - - - - - - - - - server104 True
OpenComplex -13 29 0 0 -03:13:56 00:52:49 -1.81 85.04 -1.22 80.23 -0.74 90.69 - - - - server111 False
IntFOLD7 -8 27 0 0 -50:52:21 00:52:41 3.33 84.52 2.33 79.85 0.01 90.69 - - - - server113 False
Robetta 29 0 0 0 - - - - - - - - - - - - server11 True
MultiDFold 29 0 0 0 - - - - - - - - - - - - server121 True
AIRFold 20 4 0 0 -29:15:14 00:53:14 -0.92 87.08 -0.79 81.93 - - - - - - server127 True
SAIS-Fold -13 29 0 0 -44:01:01 00:52:49 -0.10 85.04 -0.32 80.23 -0.87 90.69 - - - - server136 False
ZJUT-DeepSHFold 29 0 0 0 - - - - - - - - - - - - server137 True
Phyre2 -7 27 0 0 -00:10:51 00:53:29 25.04 84.49 19.90 79.83 20.22 90.38 - - - - server17 False
RoseTTAFold -12 29 0 0 -15:00:00 00:52:49 11.09 85.04 8.79 80.23 17.11 90.69 - - - - server19 False
SWISS-MODEL -13 29 0 0 --1:12:22 00:54:00 0.58 85.04 0.65 80.23 0.08 90.69 - - - - server20 False
RaptorX 29 0 0 0 - - - - - - - - - - - - server22 True
SPARKS-X 29 0 0 0 - - - - - - - - - - - - server30 True
NaiveBLAST -7 24 0 0 --1:07:18 00:53:14 27.56 86.44 24.24 81.01 16.03 91.16 - - - - server36 False
PRIMO 29 0 0 0 - - - - - - - - - - - - server61 True
PRIMO_BST_3D 29 0 0 0 - - - - - - - - - - - - server62 True
PRIMO_HHS_3D 29 0 0 0 - - - - - - - - - - - - server63 True
PRIMO_HHS_CL 29 0 0 0 - - - - - - - - - - - - server64 True
PRIMO_BST_CL 29 0 0 0 - - - - - - - - - - - - server65 True
IntFOLD5-TS -13 29 0 0 -36:50:37 00:52:49 17.88 85.04 14.59 80.23 12.17 90.69 - - - - server75 False
IntFOLD6-TS -13 29 0 0 -28:48:07 00:52:49 17.63 85.04 14.15 80.23 12.40 90.69 - - - - server90 False
BestSingleStructuralTemplate -10 26 0 0 -05:11:11 00:52:05 10.30 84.57 8.36 79.97 3.23 91.55 - - - - server999 False
Naive AlphaFoldDB 90 - model_1 per target comparison with the best: 1-month - [2024-12-13 - 2025-01-04]
Target
ref. PDB lDDT CAD-score lDDT-BS QS-score MM-align Difficulty
Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best Diff Ref Best