2026-09-26_00000020|hard|11SV

Structure of Yarrowia lipolytica ORC-Cdc6 bound to 60bp segment of OriA-006 mutant CNNGGNR DNA; Electron microscopy 2.56Å
Protein #1 861 residues (48% resolved)

MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKTGSLQDSEVNQEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGIPTTENLYFQGMTKEYTAIYSPEAKSAPKNKKKAAVRAIRDQDNVEISAGDVVLLKDDPDVEGKEFALIQGLKHGDQGLEAKCVLMKLFNDAEALTPKHVIPNTNKNRYSKGQELVMMNSIVDVLVEELHLPVNCYSFAEFEALSREDKKGDNVYFCRYVFDNDANKTSVEFDWQDITKDMCGFIDILYELITDKPRKRRAAVKASRQRSRHARDEDESDFELEEEEEEEEEDDIEDIDEDDEYDSPVEQVKKARTPKSAKKNTKKAPATTPRKRALEDLDLPQPDHNTTPMTTPKKKRKTENGHGLATPKRMFYKQALSDATLPYKTADLSPSKLSPHQSARAKLHVAAVPDTLPCRETEFSNVYLGIESAIRSGSGTCIFVSGTPGSGKTATVREVVSQLQIRVEDNEIPDFLFVELNGMKLTNPHTTYELLWEQLSGERLAYNNAIKLLEHRFQQKSNDTPLVVVLDELDQLVTLNQSVMYNFFNWPTLPHSKLIVVAIANTMDLPERTLSNKISSRLGLTRIQFPGYTHEQLKLIIESRLGDIAESSGTVVRPDAIEFASRKIASVSGDARRALDLCRRAVEIAELDSEEVQIKHIQQAANEATSTPIYNYLQGLPLAFKIFLCALLARKRRNGLPSDSLGDIIEEIERMIKSSENAGFLSHILLQGGKRVRMAGFMNAVTELVEAGIIIQQSIKGERSAQVRLTIGVEEITSALKNDDDVKGML

MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKTGSLQDSEVNQEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGIPTTENLYFQGMTKEYTAIYSPEAKSAPKNKKKAAVRAIRDQDNVEISAGDVVLLKDDPDVEGKEFALIQGLKHGDQGLEAKCVLMKLFNDAEALTPKHVIPNTNKNRYSKGQELVMMNSIVDVLVEELHLPVNCYSFAEFEALSREDKKGDNVYFCRYVFDNDANKTSVEFDWQDITKDMCGFIDILYELITDKPRKRRAAVKASRQRSRHARDEDESDFELEEEEEEEEEDDIEDIDEDDEYDSPVEQVKKARTPKSAKKNTKKAPATTPRKRALEDLDLPQPDHNTTPMTTPKKKRKTENGHGLATPKRMFYKQALSDATLPYKTADLSPSKLSPHQSARAKLHVAAVPDTLPCRETEFSNVYLGIESAIRSGSGTCIFVSGTPGSGKTATVREVVSQLQIRVEDNEIPDFLFVELNGMKLTNPHTTYELLWEQLSGERLAYNNAIKLLEHRFQQKSNDTPLVVVLDELDQLVTLNQSVMYNFFNWPTLPHSKLIVVAIANTMDLPERTLSNKISSRLGLTRIQFPGYTHEQLKLIIESRLGDIAESSGTVVRPDAIEFASRKIASVSGDARRALDLCRRAVEIAELDSEEVQIKHIQQAANEATSTPIYNYLQGLPLAFKIFLCALLARKRRNGLPSDSLGDIIEEIERMIKSSENAGFLSHILLQGGKRVRMAGFMNAVTELVEAGIIIQQSIKGERSAQVRLTIGVEEITSALKNDDDVKGML
Protein #2 509 residues (70% resolved)

MSRRKAPVSYSGLDTSDVSDEDFEVEDEVSTPKRRKTTSPRKQTPRRTASPRKAPGTPSPVKRSLHDKSARKKANRTLLDQSLGLVSEDEDEIELAERIIGESRAPILDSSNDFHTDERSLANVGALIAAEDRVLFLDSSEGYFDQHKTRGRGNANTMAKAPAIDHSVFFKYTNQANELFHADQKKMLRHAYRGMFSQWIFELSEGFSLLFYGLGSKRELLTDFVCEKVDSEIPILVINGYNASVQFKSVLNSVVDVLYENHEDIFAKKGFVVRNKLPKDVDLLVKLVVDTMRDIEAGSKPSLVVLCHNVDGESLRIDKASTHLSQLMSISQIWFVASVDHIMAPLMWDSAKLASYNFVWHDVTTFAPYTVETSFDDPLLLGKKAEAQGAKGVKYVLESVTPNHRSLYKNLIYCQLEEFHNVADKRKLPEAEVGALTGSTSISVDYDKVLTECLNELTVSNKKDFQEKLKEFMDHKMVVAFDDKMGMKKLYIPFSKDVVQQILEGYLDA

MSRRKAPVSYSGLDTSDVSDEDFEVEDEVSTPKRRKTTSPRKQTPRRTASPRKAPGTPSPVKRSLHDKSARKKANRTLLDQSLGLVSEDEDEIELAERIIGESRAPILDSSNDFHTDERSLANVGALIAAEDRVLFLDSSEGYFDQHKTRGRGNANTMAKAPAIDHSVFFKYTNQANELFHADQKKMLRHAYRGMFSQWIFELSEGFSLLFYGLGSKRELLTDFVCEKVDSEIPILVINGYNASVQFKSVLNSVVDVLYENHEDIFAKKGFVVRNKLPKDVDLLVKLVVDTMRDIEAGSKPSLVVLCHNVDGESLRIDKASTHLSQLMSISQIWFVASVDHIMAPLMWDSAKLASYNFVWHDVTTFAPYTVETSFDDPLLLGKKAEAQGAKGVKYVLESVTPNHRSLYKNLIYCQLEEFHNVADKRKLPEAEVGALTGSTSISVDYDKVLTECLNELTVSNKKDFQEKLKEFMDHKMVVAFDDKMGMKKLYIPFSKDVVQQILEGYLDA
Protein #3 685 residues (92% resolved)

MSNHATLLQREDQKTSYFLSDEIRALKRRRLDKSDPPKNGHKPEIDETNDSGENSETAEREDEKTTLGEIENEGHDNPDENNPFARLLGGKEPSSGVNLRWNMYQEAWGAQKAKIDELLEMTNGNILEEIVEYVSESDAENQIPAALVFPGSNIANHVRLFGQIREWLGAVKGVHMVTLHARTCPSLKAVIKNIVSDLIESEEVAEEVEVREEDLNYDRRVKYDFSILAEWCRKVGTDASQRIVLILEDVDSFDVKVLSNLVLMMHSYKDEIPFRLVFGIATSLEIFEHKMTKTSIRHLQGRVFDAQATSMFQSLFENHMFNLNNKSIIVGPTILEDILKRQNVSTESIDAFISSLKYAYMSHYYSNPFSIFTSRLLDAGDEYEQIIDSNLTGEHIDALRMLPSFRALAESKTDASEIDALLSDDSHIMDITKQAVHDFKVTARRVVSLINLFETIENVFGKFPMSWGKTEIYIPLVRGELGESDFFKAVCESFKSQSDEKIQHLAQELAKDDLFDWLHDPDTILDTITEALHNLKPFKQHLYHEIFVTDLATLQQNVFVPFQRPAIETALADPRHYLGIEDDDNKFKFVDPNISTLFTLYRESGIYINIYDWYVAFKECMPRSVIETELKKQGLVPEEGETVEDWDKRTLSWFYQAAAELKFIGCVRDTKRKVESVEKLIWRGL

MSNHATLLQREDQKTSYFLSDEIRALKRRRLDKSDPPKNGHKPEIDETNDSGENSETAEREDEKTTLGEIENEGHDNPDENNPFARLLGGKEPSSGVNLRWNMYQEAWGAQKAKIDELLEMTNGNILEEIVEYVSESDAENQIPAALVFPGSNIANHVRLFGQIREWLGAVKGVHMVTLHARTCPSLKAVIKNIVSDLIESEEVAEEVEVREEDLNYDRRVKYDFSILAEWCRKVGTDASQRIVLILEDVDSFDVKVLSNLVLMMHSYKDEIPFRLVFGIATSLEIFEHKMTKTSIRHLQGRVFDAQATSMFQSLFENHMFNLNNKSIIVGPTILEDILKRQNVSTESIDAFISSLKYAYMSHYYSNPFSIFTSRLLDAGDEYEQIIDSNLTGEHIDALRMLPSFRALAESKTDASEIDALLSDDSHIMDITKQAVHDFKVTARRVVSLINLFETIENVFGKFPMSWGKTEIYIPLVRGELGESDFFKAVCESFKSQSDEKIQHLAQELAKDDLFDWLHDPDTILDTITEALHNLKPFKQHLYHEIFVTDLATLQQNVFVPFQRPAIETALADPRHYLGIEDDDNKFKFVDPNISTLFTLYRESGIYINIYDWYVAFKECMPRSVIETELKKQGLVPEEGETVEDWDKRTLSWFYQAAAELKFIGCVRDTKRKVESVEKLIWRGL
Protein #4 511 residues (87% resolved)

MESEFPEIGGEITPTGDEMDVEIVEEVVEPAAPVLPPPQVPKPEAVSETMIDTIKSRTLSILTGKSIPEPIFLDGEKARVYSLMENAIRFGEGNSCIIVGPRGTGKTLIVESALTELEEKYNSAGSQNNFITIRLSGYAQTDDKMAVREIARQLDTVLLNQGQLIENKSISETLNQILSLFDRADIDESEKETVSLVFILDEFDRFCSTTKQTLLYTLFDVAQSSRAPIAVIGLTPRINARELLEKRVRSRFSQRVVQVKRQHGMNDFWAILRNAVIYPENLLTMVKEEGGNKTALHTDVDLDTVRYWNWHWESMFQAGPLRDHVERLFHTTKSCREFFTSAILAVSQANPWINPNDFVTDVFERGVADTESFIEGLSDLELSLIICAAKVEVMFEVDQVNFNLAYEEYIKTAKEQREALRAVDLEGMATGTVAGFRIWSRGVARAAWEKLESLNLLSPVEKSAKRVAKQLASDTSLDDEIRMTRVDVSLQELTNMLGNSHHLIQWTKIRR

MESEFPEIGGEITPTGDEMDVEIVEEVVEPAAPVLPPPQVPKPEAVSETMIDTIKSRTLSILTGKSIPEPIFLDGEKARVYSLMENAIRFGEGNSCIIVGPRGTGKTLIVESALTELEEKYNSAGSQNNFITIRLSGYAQTDDKMAVREIARQLDTVLLNQGQLIENKSISETLNQILSLFDRADIDESEKETVSLVFILDEFDRFCSTTKQTLLYTLFDVAQSSRAPIAVIGLTPRINARELLEKRVRSRFSQRVVQVKRQHGMNDFWAILRNAVIYPENLLTMVKEEGGNKTALHTDVDLDTVRYWNWHWESMFQAGPLRDHVERLFHTTKSCREFFTSAILAVSQANPWINPNDFVTDVFERGVADTESFIEGLSDLELSLIICAAKVEVMFEVDQVNFNLAYEEYIKTAKEQREALRAVDLEGMATGTVAGFRIWSRGVARAAWEKLESLNLLSPVEKSAKRVAKQLASDTSLDDEIRMTRVDVSLQELTNMLGNSHHLIQWTKIRR
Protein #5 465 residues (95% resolved)

MLPKDVVAATRRQVSCRDTQIKLLSVLLSEKAQEMPQSILVHGEPSTGKSTVLKHLLKQSSINHSIILAEQCLTTRILLQRTFRAVVEDSGKTLADDFEIICENVTAFMALLERFKAQYDFTKPHVIVLDGLDKLHENPSEIYHCFTRLNEMTSIRNVSFIFTISTLEPRALITSSIPHVRFTRYTKEEVVTILSEHELCRLPQTILSEAAKNGTEEEKDVLSRQFWGSYCQVLVDALSPYASSDVSLYKQIARRIWPVYVDPVITGSADMRETAKLYVQSQHIFSSEFAVADSLVQPGMEEALKRKRNNEQDLTGSYDLPLHSKYILVAAYLASYNPERYDIRFFSKQKDGRKGRRDTGRRKRLTLNPRMLEAPPFELERMLAILHSISPEEQFGTAAGVQSMSNIDLPGQIATLTTLKLLVRTSGDPLDSRTKWKVNAGWGLIERLARDIELPIHNYLLDENE

MLPKDVVAATRRQVSCRDTQIKLLSVLLSEKAQEMPQSILVHGEPSTGKSTVLKHLLKQSSINHSIILAEQCLTTRILLQRTFRAVVEDSGKTLADDFEIICENVTAFMALLERFKAQYDFTKPHVIVLDGLDKLHENPSEIYHCFTRLNEMTSIRNVSFIFTISTLEPRALITSSIPHVRFTRYTKEEVVTILSEHELCRLPQTILSEAAKNGTEEEKDVLSRQFWGSYCQVLVDALSPYASSDVSLYKQIARRIWPVYVDPVITGSADMRETAKLYVQSQHIFSSEFAVADSLVQPGMEEALKRKRNNEQDLTGSYDLPLHSKYILVAAYLASYNPERYDIRFFSKQKDGRKGRRDTGRRKRLTLNPRMLEAPPFELERMLAILHSISPEEQFGTAAGVQSMSNIDLPGQIATLTTLKLLVRTSGDPLDSRTKWKVNAGWGLIERLARDIELPIHNYLLDENE
Protein #6 365 residues (45% resolved)

MNQQINAEIVKLVGNVPIPREVTNLASTLMGKAQTIPMKPNETPARMALCAHVAIEKLLIELQLPAPKQSQPPVPPRSYEKLLQLFREELLGAPPGPSTPRKRKSPMKNPELVAQRTPKTPRTARQVQKDIQESGRSDANVIGEDLLNSEAIGEEDGLLPDTPSKTKKSPQKSPRKGGPKQDDPQPADIEFITKELRFPKHALEGVQRGFDFYWALVKDRWGLLFGLLMTIAFHIQHRSFTDTEATREAFKQRALQLTRRAGMPEDRVEEWIGWTETILKDQMWVKILEQKSGIAPGVIQRQLDRQTSKSSFSGIGNMIPASFAFNSYRKRNDYHNWKASMLVKMKELKGQEGLEESGTIKVQGE

MNQQINAEIVKLVGNVPIPREVTNLASTLMGKAQTIPMKPNETPARMALCAHVAIEKLLIELQLPAPKQSQPPVPPRSYEKLLQLFREELLGAPPGPSTPRKRKSPMKNPELVAQRTPKTPRTARQVQKDIQESGRSDANVIGEDLLNSEAIGEEDGLLPDTPSKTKKSPQKSPRKGGPKQDDPQPADIEFITKELRFPKHALEGVQRGFDFYWALVKDRWGLLFGLLMTIAFHIQHRSFTDTEATREAFKQRALQLTRRAGMPEDRVEEWIGWTETILKDQMWVKILEQKSGIAPGVIQRQLDRQTSKSSFSGIGNMIPASFAFNSYRKRNDYHNWKASMLVKMKELKGQEGLEESGTIKVQGE
Protein #7 604 residues (73% resolved)

MAVATPKRPQKRVRREPIRVPLKELEVNKGEDMGGQQVGEVDRGVSTEPLCLKRRKVECFEDDSVRVLSPPRESCDPFTDSSATSGSSFASPPPLHPHLVELNKIKSMFSRGSKGHILAADQEMVGRQVEEATLLRYFEGRLQAKYSQPGAALYVSGPPGTGKTALLQRVMDKVFRGKEGIKVASINCMLAPSARAIMNLIYKQLSGVEENEALSADISFDKSVAKLEELFMCQTSKEFAERGTSIVVLDEIDHIMTRDQDILFRIFEWAFCKGSRLILVGIANALDLTDRFLPRLKANNFYPQLLKFKPYDAVQIASIIKSRIVKASDEFSREHSSLKKEVVVKKEEDLILSPLNTPKKTQIDPTTLTLTPPHTPTDKTPAVAPTTMAIHPAAIQLCARKASANTGDLRKAFDICRKALEISEQEFIQKLAQNDPSTVSKPVVSIATMARVCSQVFGGNNSQRIKMLNLQQKAVLCTVASAEKQLSIEAITSGVDVPLTIQRLFDHYTSSCKKHRMLSPLPFNEFLDVCSALESYSVINITGICGKKNLGINGKGRASKGGTGASKGEVYGIRDDYVQRKVTLNVQRMDIASAIEVEWLQKYL

MAVATPKRPQKRVRREPIRVPLKELEVNKGEDMGGQQVGEVDRGVSTEPLCLKRRKVECFEDDSVRVLSPPRESCDPFTDSSATSGSSFASPPPLHPHLVELNKIKSMFSRGSKGHILAADQEMVGRQVEEATLLRYFEGRLQAKYSQPGAALYVSGPPGTGKTALLQRVMDKVFRGKEGIKVASINCMLAPSARAIMNLIYKQLSGVEENEALSADISFDKSVAKLEELFMCQTSKEFAERGTSIVVLDEIDHIMTRDQDILFRIFEWAFCKGSRLILVGIANALDLTDRFLPRLKANNFYPQLLKFKPYDAVQIASIIKSRIVKASDEFSREHSSLKKEVVVKKEEDLILSPLNTPKKTQIDPTTLTLTPPHTPTDKTPAVAPTTMAIHPAAIQLCARKASANTGDLRKAFDICRKALEISEQEFIQKLAQNDPSTVSKPVVSIATMARVCSQVFGGNNSQRIKMLNLQQKAVLCTVASAEKQLSIEAITSGVDVPLTIQRLFDHYTSSCKKHRMLSPLPFNEFLDVCSALESYSVINITGICGKKNLGINGKGRASKGGTGASKGEVYGIRDDYVQRKVTLNVQRMDIASAIEVEWLQKYL
DNA #8 60 bases

(DC)(DT)(DC)(DC)(DA)(DC)(DC)(DC)(DA)(DA)(DT)(DA)(DT)(DG)(DC)(DC)(DC)(DC)(DT)(DG)(DG)(DA)(DA)(DT)(DC)(DC)(DA)(DG)(DC)(DT)(DC)(DC)(DT)(DA)(DC)(DA)(DA)(DG)(DT)(DC)(DG)(DG)(DG)(DG)(DT)(DT)(DG)(DA)(DG)(DA)(DC)(DT)(DG)(DC)(DA)(DC)(DC)(DA)(DA)(DA)

CTCCACCCAATATGCCCCTGGAATCCAGCTCCTACAAGTCGGGGTTGAGACTGCACCAAA
DNA #9 60 bases

(DT)(DT)(DT)(DG)(DG)(DT)(DG)(DC)(DA)(DG)(DT)(DC)(DT)(DC)(DA)(DA)(DC)(DC)(DC)(DC)(DG)(DA)(DC)(DT)(DT)(DG)(DT)(DA)(DG)(DG)(DA)(DG)(DC)(DT)(DG)(DG)(DA)(DT)(DT)(DC)(DC)(DA)(DG)(DG)(DG)(DG)(DC)(DA)(DT)(DA)(DT)(DT)(DG)(DG)(DG)(DT)(DG)(DG)(DA)(DG)

TTTGGTGCAGTCTCAACCCCGACTTGTAGGAGCTGGATTCCAGGGGCATATTGGGTGGAG
Non polymer #10 ATP

InChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1

c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)O)N
Non polymer #11 MG

InChI=1S/Mg/q+2

[Mg+2]
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Reference