2026-09-05_00000042
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ligand
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12XD
Room Temperature X-Ray Structure of SARS-CoV-2 Main Protease in Complex with noncovalent inhibitor KB-1;
X-ray diffraction 2.00Å
Protein #1
306 residues (100% resolved)
Raw Sequence ...
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
Canonical Sequence ...
SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPKYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQ
Non polymer #2
A1DC3
InChI=1S/C22H21Cl2N5O5S/c1-13-2-4-14(5-3-13)35(33,34)27-17-10-15(23)16(24)11-19(17)28-6-8-29(9-7-28)21(31)18-12-20(30)26-22(32)25-18/h2-5,10-12,27H,6-9H2,1H3,(H2,25,26,30,32)
InChI=1S/C22H21Cl2N5O5S/c1-13-2-4-14(5-3-13)35(33,34)27-17-10-15(23)16(24)11-19(17)28-6-8-29(9-7-28)21(31)18-12-20(30)26-22(32)25-18/h2-5,10-12,27H,6-9H2,1H3,(H2,25,26,30,32)
SMILES: Cc1ccc(cc1)S(=O)(=O)Nc2cc(c(cc2N3CCN(CC3)C(=O)C4=CC(=O)NC(=O)N4)Cl)Cl
Cc1ccc(cc1)S(=O)(=O)Nc2cc(c(cc2N3CCN(CC3)C(=O)C4=CC(=O)NC(=O)N4)Cl)Cl
Biounit #1
homo-dimer
Download coordinates
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Model
Reference
100%