2026-08-08_00000296|hard|9XI9

SARS-CoV-2 Omicron LP.8.1 spike trimer (S-6P) in complex with 3 ZL58 Fabs and 3 ZL525 Fabs, focused refinement of RBD and Fab region; Electron microscopy 2.93Å
Protein #1 228 residues (97% resolved)

QVQLVQSGAEVKKPGSSMKVSCQASGGTFSSHPISWIRQAPGQGLEWMGRIIPIAGMTDYGQKFQGRITITADTSTSTSYVELRGLRSQDTAFYYCAKDVGYSDYGSAYYFHTWGQGTLITVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD

QVQLVQSGAEVKKPGSSMKVSCQASGGTFSSHPISWIRQAPGQGLEWMGRIIPIAGMTDYGQKFQGRITITADTSTSTSYVELRGLRSQDTAFYYCAKDVGYSDYGSAYYFHTWGQGTLITVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
Protein #2 217 residues (100% resolved)

QSVLTQPPSVSGAPGQRVTISCTGSNSNIGAGYDVHWYQQLPGTAPKLLIYRNNKRPSGVPDRFSGSKSDTSASLAITGLQAEDEAHYYCQSFDSSLGGSLFGGGTKLAVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS

QSVLTQPPSVSGAPGQRVTISCTGSNSNIGAGYDVHWYQQLPGTAPKLLIYRNNKRPSGVPDRFSGSKSDTSASLAITGLQAEDEAHYYCQSFDSSLGGSLFGGGTKLAVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Protein #3 221 residues (97% resolved)

QLELVQSGGGLVQPGGSLRLSCAASEIAVSRNYMNWVRQGPGKGLEWVSIIYPGGSTFYADSVKGRFTISTDDSKNTLYLQMDSLSTDDTALYYCARQGPNGRNDFWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD

QLELVQSGGGLVQPGGSLRLSCAASEIAVSRNYMNWVRQGPGKGLEWVSIIYPGGSTFYADSVKGRFTISTDDSKNTLYLQMDSLSTDDTALYYCARQGPNGRNDFWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
Protein #4 195 residues (100% resolved)

VTNLCPFHEVFNATTFASVYAWNRTRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIKGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKRSGNYDYWYRSLRKSKLKPFERDISTEIYQAGNKPCKGKGPNCYFPLESYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGP

VTNLCPFHEVFNATTFASVYAWNRTRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIKGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKRSGNYDYWYRSLRKSKLKPFERDISTEIYQAGNKPCKGKGPNCYFPLESYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGP
Protein #5 214 residues (100% resolved)

DIQMTQSPSSLSASAGERVTITCQASQDINMYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSVTEFTFTISSLQPEDIGTYYCHQYDSFPPTFGGGTKVDLKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC

DIQMTQSPSSLSASAGERVTITCQASQDINMYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSVTEFTFTISSLQPEDIGTYYCHQYDSFPPTFGGGTKVDLKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
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Reference