2026-08-01_00000238|hard|9LQP

Structure of transposase-activated RAG (RAG1 E962N) target capture complex with disordered U-shaped target DNA (TCC-UD); Electron microscopy 3.40Å
Protein #1 750 residues (73% resolved)

GPKKISNCSKIHLSTKLLAVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCNEEVSLEKYNHHVSSHKESKETLVHINKGGRPRQHLLSLTRRAQKHRLRELKIQVKEFADKEEGGDVKAVCLTLFLLALRARNEHRQADELEAIMQGRGSGLQPAVCLAIRVNTFLSCSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHPFEWQPPLKNVSSRTDVGIIDGLSGLASSVDEYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKESCDGMGDVSEKHGSGPAVPEKAVRFSFTVMRITIEHGSQNVKVFEEPKPNSELCCKPLCLMLADESDHETLTAILSPLIAEREAMKSSELTLEMGGIPRTFKFIFRGTGYDEKLVREVEGLEASGSVYICTLCDTTRLEASQNLVFHSITRSHAENLQRYEVWRSNPYHESVEELRDRVKGVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKHPNASKEERKRWQATLDKHLRKRMNLKPIMMMNGNFARKLMTQETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSCPAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWASEGNNSGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNA

GPKKISNCSKIHLSTKLLAVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQDCNEEVSLEKYNHHVSSHKESKETLVHINKGGRPRQHLLSLTRRAQKHRLRELKIQVKEFADKEEGGDVKAVCLTLFLLALRARNEHRQADELEAIMQGRGSGLQPAVCLAIRVNTFLSCSQYHKMYRTVKAITGRQIFQPLHALRNAEKVLLPGYHPFEWQPPLKNVSSRTDVGIIDGLSGLASSVDEYPVDTIAKRFRYDSALVSALMDMEEDILEGMRSQDLDDYLNGPFTVVVKESCDGMGDVSEKHGSGPAVPEKAVRFSFTVMRITIEHGSQNVKVFEEPKPNSELCCKPLCLMLADESDHETLTAILSPLIAEREAMKSSELTLEMGGIPRTFKFIFRGTGYDEKLVREVEGLEASGSVYICTLCDTTRLEASQNLVFHSITRSHAENLQRYEVWRSNPYHESVEELRDRVKGVSAKPFIETVPSIDALHCDIGNAAEFYKIFQLEIGEVYKHPNASKEERKRWQATLDKHLRKRMNLKPIMMMNGNFARKLMTQETVDAVCELIPSEERHEALRELMDLYLKMKPVWRSSCPAKECPESLCQYSFNSQRFAELLSTKFKYRYEGKITNYFHKTLAHVPEIIERDGSIGAWASEGNNSGNKLFRRFRKMNARQSKCYEMEDVLKHHWLYTSKYLQKFMNAHNA
Protein #2 457 residues (74% resolved)

GPMERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKDGGGNGSGGSGMSLQMVTVGHNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHFDIKQNHLKLKPAIFSKDSCYLPPLRYPATCSYKGSIDSDKHQYIIHGGKTPNNELSDKIYIMSVACKNNKKVTFRCTEKDLVGDVPEPRYGHSIDVVYSRGKSMGVLFGGRSYMPSTQRTTEKWNSVADCLPHVFLIDFEFGCATSYILPELQDGLSFHVSIARNDTVYILGGHSLASNIRPANLYRIRVDLPLGTPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMVCSLVSLGDNTIEISEMETPDWTSDIKHSKIWFGSNMGNGTIFLGIPGDNAFYFYTLRCSEEDLSEDQKI

GPMERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQKDGGGNGSGGSGMSLQMVTVGHNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHFDIKQNHLKLKPAIFSKDSCYLPPLRYPATCSYKGSIDSDKHQYIIHGGKTPNNELSDKIYIMSVACKNNKKVTFRCTEKDLVGDVPEPRYGHSIDVVYSRGKSMGVLFGGRSYMPSTQRTTEKWNSVADCLPHVFLIDFEFGCATSYILPELQDGLSFHVSIARNDTVYILGGHSLASNIRPANLYRIRVDLPLGTPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLENQKRMVCSLVSLGDNTIEISEMETPDWTSDIKHSKIWFGSNMGNGTIFLGIPGDNAFYFYTLRCSEEDLSEDQKI
DNA #3 59 bases

(DA)(DT)(DG)(DG)(DT)(DC)(DC)(DC)(DA)(DC)(DG)(DC)(DT)(DA)(DA)(DC)(DC)(DT)(DA)(DA)(DT)(DA)(DG)(DA)(DA)(DT)(DT)(DC)(DC)(DC)(DC)(DG)(DT)(DT)(DC)(DA)(DT)(DC)(DT)(DG)(DA)(DC)(DA)(DC)(DA)(DC)(DA)(DG)(DC)(DG)(DT)(DG)(DG)(DG)(DA)(DC)(DC)(DA)(DG)

ATGGTCCCACGCTAACCTAATAGAATTCCCCGTTCATCTGACACACAGCGTGGGACCAG
DNA #4 59 bases

(DC)(DT)(DG)(DG)(DT)(DC)(DC)(DC)(DA)(DC)(DG)(DC)(DT)(DG)(DT)(DG)(DT)(DG)(DT)(DC)(DA)(DG)(DA)(DT)(DG)(DA)(DA)(DC)(DG)(DG)(DG)(DG)(DA)(DA)(DT)(DT)(DC)(DT)(DA)(DT)(DT)(DA)(DG)(DG)(DT)(DT)(DA)(DG)(DC)(DG)(DT)(DG)(DG)(DG)(DA)(DC)(DC)(DA)(DT)

CTGGTCCCACGCTGTGTGTCAGATGAACGGGGAATTCTATTAGGTTAGCGTGGGACCAT
DNA #5 45 bases

(DG)(DG)(DT)(DC)(DG)(DA)(DG)(DG)(DT)(DT)(DT)(DT)(DT)(DG)(DT)(DA)(DC)(DA)(DG)(DC)(DC)(DA)(DG)(DA)(DC)(DA)(DA)(DC)(DA)(DG)(DC)(DC)(DT)(DA)(DC)(DT)(DA)(DC)(DC)(DA)(DC)(DT)(DG)(DT)(DG)

GGTCGAGGTTTTTGTACAGCCAGACAACAGCCTACTACCACTGTG
DNA #6 45 bases

(DC)(DA)(DC)(DA)(DG)(DT)(DG)(DG)(DT)(DA)(DG)(DT)(DA)(DG)(DG)(DC)(DT)(DG)(DT)(DT)(DG)(DT)(DC)(DT)(DG)(DG)(DC)(DT)(DG)(DT)(DA)(DC)(DA)(DA)(DA)(DA)(DA)(DC)(DC)(DT)(DC)(DG)(DA)(DC)(DC)

CACAGTGGTAGTAGGCTGTTGTCTGGCTGTACAAAAACCTCGACC
DNA #7 34 bases

(DG)(DG)(DT)(DC)(DG)(DA)(DG)(DG)(DT)(DT)(DT)(DT)(DT)(DG)(DT)(DA)(DC)(DA)(DG)(DC)(DC)(DT)(DA)(DC)(DT)(DA)(DC)(DC)(DA)(DC)(DT)(DG)(DT)(DG)

GGTCGAGGTTTTTGTACAGCCTACTACCACTGTG
DNA #8 34 bases

(DC)(DA)(DC)(DA)(DG)(DT)(DG)(DG)(DT)(DA)(DG)(DT)(DA)(DG)(DG)(DC)(DT)(DG)(DT)(DA)(DC)(DA)(DA)(DA)(DA)(DA)(DC)(DC)(DT)(DC)(DG)(DA)(DC)(DC)

CACAGTGGTAGTAGGCTGTACAAAAACCTCGACC
Non polymer #9 ZN

InChI=1S/Zn/q+2

[Zn+2]
Download coordinates
Reference