2026-05-09_00000211|ligand|9YKR

Crystal structure of the GLP (EHMT1) SET domain in complex with SAM and TNG917; X-ray diffraction 1.38Å

Protein #1 262 residues (100% resolved)

Raw Sequence ...

GVERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCRHS

Canonical Sequence ...

Non polymer #2 A1CXM

InChI=1S/C20H24FN5O/c1-12-10-16(22-2)26-20(24-12)25-15-11-14-6-9-27-19(14)17(18(15)21)13-4-3-7-23-8-5-13/h5,10-11,23H,3-4,6-9H2,1-2H3,(H2,22,24,25,26)

SMILES: Cc1cc(nc(n1)Nc2cc3c(c(c2F)C4=CCNCCC4)OCC3)NC

Cc1cc(nc(n1)Nc2cc3c(c(c2F)C4=CCNCCC4)OCC3)NC

Non polymer #3 EDO

InChI=1S/C2H6O2/c3-1-2-4/h3-4H,1-2H2

SMILES: C(CO)O

C(CO)O

Non polymer #4 PEG

InChI=1S/C4H10O3/c5-1-3-7-4-2-6/h5-6H,1-4H2

SMILES: C(COCCO)O

C(COCCO)O

Non polymer #5 SAM

InChI=1S/C15H22N6O5S/c1-27(3-2-7(16)15(24)25)4-8-10(22)11(23)14(26-8)21-6-20-9-12(17)18-5-19-13(9)21/h5-8,10-11,14,22-23H,2-4,16H2,1H3,(H2-,17,18,19,24,25)/t7-,8+,10+,11+,14+,27-/m0/s1

SMILES: C[S@@+](CC[C@@H](C(=O)[O-])N)C[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O

C[S@@+](CC[C@@H](C(=O)[O-])N)C[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O

Non polymer #6 ZN

InChI=1S/Zn/q+2

SMILES: [Zn+2]

[Zn+2]

Biounit #1 homo-dimer

Reference