2026-05-02_00000234
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ligand
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9VDD
The crystal structure of PDE4D with inhibitor LH17;
X-ray diffraction 2.30Å
Protein #1
327 residues (99% resolved)
Raw Sequence ...
TEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQSTIPQ
Canonical Sequence ...
TEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQSTIPQ
Non polymer #2
A1ERT
InChI=1S/C28H25NO6/c1-28(2)12-9-20-21(35-28)15-22-23(26(20)33-16-17-10-13-29-14-11-17)24(30)27(32-4)25(34-22)18-5-7-19(31-3)8-6-18/h5-15H,16H2,1-4H3
InChI=1S/C28H25NO6/c1-28(2)12-9-20-21(35-28)15-22-23(26(20)33-16-17-10-13-29-14-11-17)24(30)27(32-4)25(34-22)18-5-7-19(31-3)8-6-18/h5-15H,16H2,1-4H3
SMILES: CC1(C=Cc2c(cc3c(c2OCc4ccncc4)C(=O)C(=C(O3)c5ccc(cc5)OC)OC)O1)C
CC1(C=Cc2c(cc3c(c2OCc4ccncc4)C(=O)C(=C(O3)c5ccc(cc5)OC)OC)O1)C
Non polymer #3
MG
InChI=1S/Mg/q+2
InChI=1S/Mg/q+2
SMILES: [Mg+2]
[Mg+2]
Non polymer #4
ZN
InChI=1S/Zn/q+2
InChI=1S/Zn/q+2
SMILES: [Zn+2]
[Zn+2]
Biounit #1
homo-dimer
Download coordinates
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Model
Reference
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