2026-04-11_00000061|hard|9K11

A cryo-EM structure of B. oleracea RNA polymerase V in complex with 0U scaffold at 2.96 Angstrom; Electron microscopy 2.96Å
DNA #1 34 bases

(DA)(DA)(DG)(DC)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DA)(DC)(DG)(DG)(DC)(DC)(DT)(DG)(DG)(DT)(DC)(DA)(DT)(DT)(DA)(DC)(DG)(DA)(DG)(DT)(DA)

AAGCAAAAAAAAAACGGCCTGGTCATTACGAGTA
DNA #2 34 bases

(DT)(DA)(DC)(DT)(DC)(DG)(DT)(DA)(DA)(DG)(DC)(DT)(DA)(DG)(DT)(DA)(DT)(DT)(DG)(DA)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DT)(DG)(DC)(DT)(DT)

TACTCGTAAGCTAGTATTGATTTTTTTTTTGCTT
RNA #3 20 bases

UAUAUGCAGAAAGACCAGGC

UAUAUGCAGAAAGACCAGGC
Protein #4 2032 residues (42% resolved)

MEEASSSDILEAEIVGISFALATHRQIRLASISDAGINHASQLSNAFLGLPLEFGKCEACGATEPDKCEGHFGYIHLPVPIYHPAHVSELKQMLSLLCLKCLKIKKIKSTSSGLAERLLGVCCEEASNITIKDKSSDGASYLQLKLPSRTRLQEGFWNFLERYGYRYGSDHTRPLLAREVKEILRRIPEETRKKLTAKGHIPQEGYILEYLPVPPNCLSVPEVSDGSNSMSVDPSRIELKDVLRKVVAINNSRSGETNFESHRAEANEMFRVVDTYLQVRGTAKPTRNIDMRFGVSKISDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAFRNVNEVGIPMEIAHRITFEERVSVHNIGYLQELVDNKMCLSYTQGSTTYSLRDGSKGHTVLKPGQIVHRRVMDGDVVFINRPPTTHKHSLQALRVYVHEDNTVKINPLMCGPLSADFDGDCVHLFYPQSLTAKAEVLELFSVDKQLRSSHTGQLILQLGLDSLLSLRVMMEQVFLDKASAQQLAMYGSRSLPSPAVVKSSKSGPAWTFFQILQLAFPERLSCRGDGFIVGGSDLLSFDFGVDALASIINGIVTGIMVEKGPKEALAFFDSLQPLLMEHLDPQGFSLSLEDLSMSREDMGVIHNLIVREISPMVSRLRLSYEDELQLENSIQKVKEVAANFMLKSYSMRNLIDIKSNSAINKLVQQIGFLGLQLSDKKKLYTKTLVEDMAQFYKKKYVSTSSSGDFGIVKGCFFHGLDPYEEMAHSVAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSIVQFKYELSSDNENQGLFEAGDPVGVLAATAMSNPAYKAVLDSSPNSNSSWELMKEVLLCKVNFQNTTNDRRVILYLNECRCGKKYCQENSAYTVRNKLKKVSLKDTAVEFLVEYRKQQAISEIFGMDICLHGHIHLNKTLLEGWNISMQDILQRCEDAINSLVQKKKKKAEDFKKMNLSVSECCSFRGPGSSKDSDMPCLMFSSYNATDPDLERTLDVLCNTIYPVLLETVIKGDPRIASANIIWNSPETTTWIRSLHASRRGEWVLDVTVEKSDVKQSGDAWRVVIDSCLSVLHLIDTKRSIPYSIKQVQELLGLSCAFEQAVQRLSASVRKVSKGVLKEHIILVANNMTCSGDMLGFNYGGYKALTRSLNIKAPFTEATLIAPRKCFEKAAEKCHKDSLSTVVGSCSWGKRVDVGTGSQFELLWNKKETGLENDDETDVFSFLQMVRSTKTADAYVSSPGFDVTEEEMAEWAESPERDSALGEPKFDDSAEFQNLLDEGKASESKWDNGSLWENGCSSGSEWGVSKNAGGEENTQSGWGKAANVENEDASSGWNSKKDAQEATNTDSWGAWGSKTKDDAENATPNWGTKPAQNDSVVIENGEPSSDVWGPKAVSDKPWGKKNSETEPAPAAWGKTNSESESAAAAWGSDDEKNTGTESDAAGWGSTYKKNPETELNAAAWGSGAKMNKETEPAPAAWGSWGKKSSETVSGGADWGNRGKRVSETESGAGGWASRNRSLENQSGGATWGSRDKSKFETESGGAAWGSQAKNNSETEPGSGAAALGTWDKKKPETETGGGGAAWGSQAKNNSETESGSGAAAWGTWDKKKSETESGGGAWGSQAKKNSETESGAGASTWGAWDKKKPETESGGGGAAWGSQAKNNSETESGSGAAAWGSQAKKNSESQLGTANWGSKDTNNSENGSDSAAWGKKKNSEAEPTSVAWCSWGQPSPPASDKDAQEDDGNPWVSLKATSSGDKEGNETSQWGVPNKRYPSAGSQSQGGGGGADWKRNRPPRTPGSESILGPMFTATRQRVDMFTSEEQELLSDVDPVMRRLRKIMHQSGYTDGEPISDEDKTYVLEQILNYHPDKDAKLGPGLDFITVDKHTTFTESRCFFVVSTDGTKQDFSYRKCINNYLVEKHPNLAEEFIAKYFRKRDNENRDKNSQEATPPGEQESQTQPIDNGSQDSQPQPIGNEGGDTQPQSQIEDIQPIGNGGEDSQTEPQA

MEEASSSDILEAEIVGISFALATHRQIRLASISDAGINHASQLSNAFLGLPLEFGKCEACGATEPDKCEGHFGYIHLPVPIYHPAHVSELKQMLSLLCLKCLKIKKIKSTSSGLAERLLGVCCEEASNITIKDKSSDGASYLQLKLPSRTRLQEGFWNFLERYGYRYGSDHTRPLLAREVKEILRRIPEETRKKLTAKGHIPQEGYILEYLPVPPNCLSVPEVSDGSNSMSVDPSRIELKDVLRKVVAINNSRSGETNFESHRAEANEMFRVVDTYLQVRGTAKPTRNIDMRFGVSKISDSSSSKAWTEKMRTLFIRKGSGFSSRSVITGDAFRNVNEVGIPMEIAHRITFEERVSVHNIGYLQELVDNKMCLSYTQGSTTYSLRDGSKGHTVLKPGQIVHRRVMDGDVVFINRPPTTHKHSLQALRVYVHEDNTVKINPLMCGPLSADFDGDCVHLFYPQSLTAKAEVLELFSVDKQLRSSHTGQLILQLGLDSLLSLRVMMEQVFLDKASAQQLAMYGSRSLPSPAVVKSSKSGPAWTFFQILQLAFPERLSCRGDGFIVGGSDLLSFDFGVDALASIINGIVTGIMVEKGPKEALAFFDSLQPLLMEHLDPQGFSLSLEDLSMSREDMGVIHNLIVREISPMVSRLRLSYEDELQLENSIQKVKEVAANFMLKSYSMRNLIDIKSNSAINKLVQQIGFLGLQLSDKKKLYTKTLVEDMAQFYKKKYVSTSSSGDFGIVKGCFFHGLDPYEEMAHSVAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITNDGTVRNTCSNSIVQFKYELSSDNENQGLFEAGDPVGVLAATAMSNPAYKAVLDSSPNSNSSWELMKEVLLCKVNFQNTTNDRRVILYLNECRCGKKYCQENSAYTVRNKLKKVSLKDTAVEFLVEYRKQQAISEIFGMDICLHGHIHLNKTLLEGWNISMQDILQRCEDAINSLVQKKKKKAEDFKKMNLSVSECCSFRGPGSSKDSDMPCLMFSSYNATDPDLERTLDVLCNTIYPVLLETVIKGDPRIASANIIWNSPETTTWIRSLHASRRGEWVLDVTVEKSDVKQSGDAWRVVIDSCLSVLHLIDTKRSIPYSIKQVQELLGLSCAFEQAVQRLSASVRKVSKGVLKEHIILVANNMTCSGDMLGFNYGGYKALTRSLNIKAPFTEATLIAPRKCFEKAAEKCHKDSLSTVVGSCSWGKRVDVGTGSQFELLWNKKETGLENDDETDVFSFLQMVRSTKTADAYVSSPGFDVTEEEMAEWAESPERDSALGEPKFDDSAEFQNLLDEGKASESKWDNGSLWENGCSSGSEWGVSKNAGGEENTQSGWGKAANVENEDASSGWNSKKDAQEATNTDSWGAWGSKTKDDAENATPNWGTKPAQNDSVVIENGEPSSDVWGPKAVSDKPWGKKNSETEPAPAAWGKTNSESESAAAAWGSDDEKNTGTESDAAGWGSTYKKNPETELNAAAWGSGAKMNKETEPAPAAWGSWGKKSSETVSGGADWGNRGKRVSETESGAGGWASRNRSLENQSGGATWGSRDKSKFETESGGAAWGSQAKNNSETEPGSGAAALGTWDKKKPETETGGGGAAWGSQAKNNSETESGSGAAAWGTWDKKKSETESGGGAWGSQAKKNSETESGAGASTWGAWDKKKPETESGGGGAAWGSQAKNNSETESGSGAAAWGSQAKKNSESQLGTANWGSKDTNNSENGSDSAAWGKKKNSEAEPTSVAWCSWGQPSPPASDKDAQEDDGNPWVSLKATSSGDKEGNETSQWGVPNKRYPSAGSQSQGGGGGADWKRNRPPRTPGSESILGPMFTATRQRVDMFTSEEQELLSDVDPVMRRLRKIMHQSGYTDGEPISDEDKTYVLEQILNYHPDKDAKLGPGLDFITVDKHTTFTESRCFFVVSTDGTKQDFSYRKCINNYLVEKHPNLAEEFIAKYFRKRDNENRDKNSQEATPPGEQESQTQPIDNGSQDSQPQPIGNEGGDTQPQSQIEDIQPIGNGGEDSQTEPQA
Protein #5 319 residues (90% resolved)

MDTGATYQRFPKVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSAKCVTDQTLDVTSKDLYSADPTVTPVDFGDSSGADSSEQRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLTDDEKIDLIESSPTKVFDFDAVTRQVVVVDPEAYTYDEEVIKKAEAMGKQGLIEIRPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSDDTVEADDQFGELGAHMRGG

MDTGATYQRFPKVKIRELKDDYAKFELRDTDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSAKCVTDQTLDVTSKDLYSADPTVTPVDFGDSSGADSSEQRGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLTDDEKIDLIESSPTKVFDFDAVTRQVVVVDPEAYTYDEEVIKKAEAMGKQGLIEIRPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSDDTVEADDQFGELGAHMRGG
Protein #6 144 residues (56% resolved)

MAEDDYNEVDDLGYEDEPAEPEIEEGIEEDADMKDNDDINGEPLETEDKVETEPVQRPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGSFEEWGVDELIVEDSWKRQVGGD

MAEDDYNEVDDLGYEDEPAEPEIEEGIEEDADMKDNDDINGEPLETEDKVETEPVQRPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGSFEEWGVDELIVEDSWKRQVGGD
Protein #7 71 residues (89% resolved)

MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDAIGLVRYCCRRMLMTHVDLIEKLLNYNTLEKSDAN

MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDAIGLVRYCCRRMLMTHVDLIEKLLNYNTLEKSDAN
Protein #8 116 residues (93% resolved)

MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDFLKSQFEAEVAKFSNPY

MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDFLKSQFEAEVAKFSNPY
Protein #9 51 residues (88% resolved)

MDQQSEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR

MDQQSEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR
Protein #10 146 residues (97% resolved)

MASSIIMFEDIFVVDKLDPDGKKFDKVTRIEATSHNLDMFMHLDVNTEVYPMAVGDKFTLAMAPTLNLDGTPDTGYFTPGAKKTLADKYEYVMHGKLYKITERDGQTPKAEMYVSFGGLLMLLRGDPAHISHFELDQRLFLLMRKL

MASSIIMFEDIFVVDKLDPDGKKFDKVTRIEATSHNLDMFMHLDVNTEVYPMAVGDKFTLAMAPTLNLDGTPDTGYFTPGAKKTLADKYEYVMHGKLYKITERDGQTPKAEMYVSFGGLLMLLRGDPAHISHFELDQRLFLLMRKL
Protein #11 114 residues (85% resolved)

MSTMKFCRECNNILYPKEDREQSILLYACRNCDHQEAADDNCVYRNEVHHSVSEQTQILSDVASDPTLPRTKAVRCAKCQHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRE

MSTMKFCRECNNILYPKEDREQSILLYACRNCDHQEAADDNCVYRNEVHHSVSEQTQILSDVASDPTLPRTKAVRCAKCQHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRE
Protein #12 230 residues (91% resolved)

MEGIGNDKSSCSSSSTVPSPCLSKYVDPSSEESHRYYLARRNALEMLRDRGYEVSLEDINLSLQDFRTVYGERPDVDRLRISAHHRSDSSNKVKVVFFGTGKVKVNTIRSVAAEILSQETITGLILVLQNQVTDKALKAIELFTFKVEIFQITDLLVNLTKHVLSLRHRVLTDGEKKALLKQFNIEEKQLPRISKKDAVVRYYGLEKGQIVKVSYRGELTESYVAYRCVW

MEGIGNDKSSCSSSSTVPSPCLSKYVDPSSEESHRYYLARRNALEMLRDRGYEVSLEDINLSLQDFRTVYGERPDVDRLRISAHHRSDSSNKVKVVFFGTGKVKVNTIRSVAAEILSQETITGLILVLQNQVTDKALKAIELFTFKVEIFQITDLLVNLTKHVLSLRHRVLTDGEKKALLKQFNIEEKQLPRISKKDAVVRYYGLEKGQIVKVSYRGELTESYVAYRCVW
Protein #13 1169 residues (83% resolved)

MTDIDIEEIEAAGEVDLRDLGEPFLQSFCKKAATSFFDEYGLVSHQLNSYNFFIEHGLQSVFESSGEMLVEPSFDPTKNKDHEWRYATVKFGEVSVDKPTLYSDDKELVFLPWHARLQNMTYSARMKVNVDVEVFVKKVVKRDKFKTGQDEYVEKQILSKKTQDIPIGRIPVMVKSVLCNTTEKGKNGESYRKGECAFDQGGYFVIKGAEKVFIAQEQICTKRLWISNSPWTVSYRSETKRNRFIVRLSENQKAEDFKRKEKVLTVYFLSTEIPVWVLFFALGVASDKEAVDLIAFDGGDASITNSVVASIQEADSVCEDFRHGRNALAYVEQQIKGTKFPPGESVDECLSLYLFPGLKSLTQKARFLGYMVKCLFSAYAGKRKCENRDNFRNKRIELAGELLERELRVHLAHARRTMTKAMQRHLTGDGDLKPIEHYLDASIITNGLSRAFSTGAWCHPFRKMERVSGVVANLGRANPLQSLIDLRRTRQQVLYTGRVGDARYPHPSHWGRLCFLSTPDGENCGLVKNLSLLGLVSTQIMEPVVEELFDSGMEELMDDTSTPLSGKHKVLLNGDWVGVCSDSDYFVADLKSRRRQSELPRQMEIKLDKDDKEVRIFTDAGRLLRPLLVVENLHKLKQSKPSKYTFEHLLDQGILELIGIEEEEDCTTAWGTKQLLKQQKSYTHCELDLSFLLGVSCAIVPFANHDHGRRVLYQSQKHCQQAIGFCSTNPNIRCDTLSQQLFYPQRPLFKTMASECLQKDVLFNGQNAIVAVNVHLGFNQEDSIVMNKASLERGMFRSEQIRSYKADVDSKDSEKRKKMDEVVQFGKTHSKIGRVDSLDDDGFPFVGANMHSGDIVIGRCTESGTDHSVKLKHTERGIVQKVVLSSNDDGKNYATVSLRQVRSPCLGDKFSSMHGQKGVLGYIEEQENFAFTNQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPMQKKKGKSDAYSKVTRHATPFSTPSVDDITDQLHRAGFSRSGNERVYNGRTGEMMRSLIFMGPNFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRNCKSAANVIERVASSGRRIRGPYCRLCESPDYVVMVNVPYGAKLLYQELFSMGICLNFETNLC

MTDIDIEEIEAAGEVDLRDLGEPFLQSFCKKAATSFFDEYGLVSHQLNSYNFFIEHGLQSVFESSGEMLVEPSFDPTKNKDHEWRYATVKFGEVSVDKPTLYSDDKELVFLPWHARLQNMTYSARMKVNVDVEVFVKKVVKRDKFKTGQDEYVEKQILSKKTQDIPIGRIPVMVKSVLCNTTEKGKNGESYRKGECAFDQGGYFVIKGAEKVFIAQEQICTKRLWISNSPWTVSYRSETKRNRFIVRLSENQKAEDFKRKEKVLTVYFLSTEIPVWVLFFALGVASDKEAVDLIAFDGGDASITNSVVASIQEADSVCEDFRHGRNALAYVEQQIKGTKFPPGESVDECLSLYLFPGLKSLTQKARFLGYMVKCLFSAYAGKRKCENRDNFRNKRIELAGELLERELRVHLAHARRTMTKAMQRHLTGDGDLKPIEHYLDASIITNGLSRAFSTGAWCHPFRKMERVSGVVANLGRANPLQSLIDLRRTRQQVLYTGRVGDARYPHPSHWGRLCFLSTPDGENCGLVKNLSLLGLVSTQIMEPVVEELFDSGMEELMDDTSTPLSGKHKVLLNGDWVGVCSDSDYFVADLKSRRRQSELPRQMEIKLDKDDKEVRIFTDAGRLLRPLLVVENLHKLKQSKPSKYTFEHLLDQGILELIGIEEEEDCTTAWGTKQLLKQQKSYTHCELDLSFLLGVSCAIVPFANHDHGRRVLYQSQKHCQQAIGFCSTNPNIRCDTLSQQLFYPQRPLFKTMASECLQKDVLFNGQNAIVAVNVHLGFNQEDSIVMNKASLERGMFRSEQIRSYKADVDSKDSEKRKKMDEVVQFGKTHSKIGRVDSLDDDGFPFVGANMHSGDIVIGRCTESGTDHSVKLKHTERGIVQKVVLSSNDDGKNYATVSLRQVRSPCLGDKFSSMHGQKGVLGYIEEQENFAFTNQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPMQKKKGKSDAYSKVTRHATPFSTPSVDDITDQLHRAGFSRSGNERVYNGRTGEMMRSLIFMGPNFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRNCKSAANVIERVASSGRRIRGPYCRLCESPDYVVMVNVPYGAKLLYQELFSMGICLNFETNLC
Non polymer #14 MG

InChI=1S/Mg/q+2

[Mg+2]
Non polymer #15 ZN

InChI=1S/Zn/q+2

[Zn+2]
Download coordinates
Reference