2026-02-28_00000148|ligand|9M28

Crystal Structure of monomeric Rag-like small GTPase from Asgard Lokiarchaeota (LokiRagM) in complex with GTP; X-ray diffraction 2.00Å
Protein #1 385 residues (78% resolved)

GPKLNPQKNPQKIALFGLNYAGKTSILKTILYEFEAFAHILPTTGVDRTELDFFGKSLLIWDFGGQSVYRDDYLKQPIRYFQRIKYFYYVVDVQDIDRIKESAEYFLKLIKLTTEYSDDFKIFIFFHKIDPNYRGKTKFEESENRFLVEILPTINELKFTPTYFYTSIYNPISVISAFSQPLLGNETIYQTLSDALDSFCFNIDLEFGLLFVQNFIIGSHFSEPEIISKISKKMTMYLEDLDEFEDCPPFTVDPYKIFTKNFVISVGDNNFYFHFSVGINILNIPDDMDEIFDAMDEYTYNLRKILENSELIRTGELRNEEILSGINELETRYIITEEEELEGLEQEDKIKNIQRNLELEIMENKVMEEDDQENIEEVEENDFKD

GPKLNPQKNPQKIALFGLNYAGKTSILKTILYEFEAFAHILPTTGVDRTELDFFGKSLLIWDFGGQSVYRDDYLKQPIRYFQRIKYFYYVVDVQDIDRIKESAEYFLKLIKLTTEYSDDFKIFIFFHKIDPNYRGKTKFEESENRFLVEILPTINELKFTPTYFYTSIYNPISVISAFSQPLLGNETIYQTLSDALDSFCFNIDLEFGLLFVQNFIIGSHFSEPEIISKISKKMTMYLEDLDEFEDCPPFTVDPYKIFTKNFVISVGDNNFYFHFSVGINILNIPDDMDEIFDAMDEYTYNLRKILENSELIRTGELRNEEILSGINELETRYIITEEEELEGLEQEDKIKNIQRNLELEIMENKVMEEDDQENIEEVEENDFKD
Non polymer #2 EDO

InChI=1S/C2H6O2/c3-1-2-4/h3-4H,1-2H2

C(CO)O
Non polymer #3 GTP

InChI=1S/C10H16N5O14P3/c11-10-13-7-4(8(18)14-10)12-2-15(7)9-6(17)5(16)3(27-9)1-26-31(22,23)29-32(24,25)28-30(19,20)21/h2-3,5-6,9,16-17H,1H2,(H,22,23)(H,24,25)(H2,19,20,21)(H3,11,13,14,18)/t3-,5-,6-,9-/m1/s1

c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)O)N=C(NC2=O)N
Non polymer #4 MG

InChI=1S/Mg/q+2

[Mg+2]
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Reference