2025-12-20_00000087
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medium
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9IIB
Crystal structure of NodD-EBD (Effector Binding Domain) in complex with hesperetin from Rhizobium leguminosarum bv. vicae 3841;
X-ray diffraction 2.75Å
Protein #1
216 residues (95% resolved)
Raw Sequence ...
NPAESDRRFRIILSDFMALVFFDKIILRLAREAPGVSFELLPLDDDPEELLRRGDVDFLILPDLFMSGAHPKARLFEERLVCVGCPTNEQLQGQLSLEQYMSMGHVAAKFGRGLKPSVEQWLLMQHGLKRRIELVVPGFNLIPPLLSGTNRIATIPLRLVKHYERTIPLRIIEHPLPLVSFTEAVQWPALHNTDPGNIWMREIMIQEALRMESEME
Canonical Sequence ...
NPAESDRRFRIILSDFMALVFFDKIILRLAREAPGVSFELLPLDDDPEELLRRGDVDFLILPDLFMSGAHPKARLFEERLVCVGCPTNEQLQGQLSLEQYMSMGHVAAKFGRGLKPSVEQWLLMQHGLKRRIELVVPGFNLIPPLLSGTNRIATIPLRLVKHYERTIPLRIIEHPLPLVSFTEAVQWPALHNTDPGNIWMREIMIQEALRMESEME
Non polymer #2
6JP
InChI=1S/C16H14O6/c1-21-13-3-2-8(4-10(13)18)14-7-12(20)16-11(19)5-9(17)6-15(16)22-14/h2-6,14,17-19H,7H2,1H3/t14-/m0/s1
InChI=1S/C16H14O6/c1-21-13-3-2-8(4-10(13)18)14-7-12(20)16-11(19)5-9(17)6-15(16)22-14/h2-6,14,17-19H,7H2,1H3/t14-/m0/s1
SMILES: COc1ccc(cc1O)[C@@H]2CC(=O)c3c(cc(cc3O2)O)O
COc1ccc(cc1O)[C@@H]2CC(=O)c3c(cc(cc3O2)O)O
Biounit #1
homo-dimer
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Biounit #2
homo-dimer
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Model
Reference
100%