2025-12-13_00000235
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ligand
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9SDW
tRNA (guanine-7-)-methyltransferase (trmD) from Staphylococcus aureus in complex with SAM-competitive compound;
X-ray diffraction 2.60Å
Protein #1
263 residues (87% resolved)
Raw Sequence ...
HHHHHHSSGLVPRGSHMASKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVTEQTRVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKIGLKKG
Canonical Sequence ...
HHHHHHSSGLVPRGSHMASKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQGMVLKPEPVFNAMEDLDVTEQTRVILMCPQGEPFSHQKAVELSKADHIVFICGHYEGYDERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTNADKQILERYKIGLKKG
Non polymer #2
A1JNG
InChI=1S/C11H13N9O/c12-11(13)14-1-2-20-4-7(18-19-20)6-3-15-9-8(6)10(21)17-5-16-9/h3-5H,1-2H2,(H4,12,13,14)(H2,15,16,17,21)
InChI=1S/C11H13N9O/c12-11(13)14-1-2-20-4-7(18-19-20)6-3-15-9-8(6)10(21)17-5-16-9/h3-5H,1-2H2,(H4,12,13,14)(H2,15,16,17,21)
SMILES: [H]/N=C(/N)\NCCn1cc(nn1)c2c[nH]c3c2C(=O)NC=N3
[H]/N=C(/N)\NCCn1cc(nn1)c2c[nH]c3c2C(=O)NC=N3
Biounit #1
monomer
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Model
Reference
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