2025-11-15_00000042
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hard
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9EBP
Structure of the Bacillus subtilis yjdF riboswitch complexed with lumichrome in the presence of iridium hexammine;
X-ray diffraction 2.70Å
RNA #1
81 bases
Raw Sequence ...
(GDP)GAUGAAAAAACACGAUUCGGUUGGUAGUCCGGAUGCCGAAAGGUCAGUAACCUUCCACGAAAGUGGAUGUCCAUCAUCCA
Canonical Sequence ...
GGAUGAAAAAACACGAUUCGGUUGGUAGUCCGGAUGCCGAAAGGUCAGUAACCUUCCACGAAAGUGGAUGUCCAUCAUCCA
Non polymer #2
IRI
InChI=1S/Ir.6H3N/h;6*1H3/q+3;;;;;;
InChI=1S/Ir.6H3N/h;6*1H3/q+3;;;;;;
SMILES: [NH3][Ir+3]([NH3])([NH3])([NH3])([NH3])[NH3]
[NH3][Ir+3]([NH3])([NH3])([NH3])([NH3])[NH3]
Non polymer #3
LUM
InChI=1S/C12H10N4O2/c1-5-3-7-8(4-6(5)2)14-10-9(13-7)11(17)16-12(18)15-10/h3-4H,1-2H3,(H2,14,15,16,17,18)
InChI=1S/C12H10N4O2/c1-5-3-7-8(4-6(5)2)14-10-9(13-7)11(17)16-12(18)15-10/h3-4H,1-2H3,(H2,14,15,16,17,18)
SMILES: Cc1cc2c(cc1C)nc3c(n2)C(=O)NC(=O)N3
Cc1cc2c(cc1C)nc3c(n2)C(=O)NC(=O)N3
Biounit #1
monomer
Download coordinates
Biounit #2
monomer
Download coordinates
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Model
Reference
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