2025-10-04_00000028
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hard
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9C6Y
Crystal structure of SARS-CoV-2 XBB.1.5 RBD bound to COV2-3906 Fab;
X-ray diffraction 2.68Å
Protein #1
225 residues (99% resolved)
Raw Sequence ...
QVQLQESGPGLVKPSQTLSLTCTVSGDSISSDGYYWSWLRQRPGKGLEWIGYIYNSGSTHYNPSLNSRVSISIDTSKTQFSLKLSSVTAADTAVYYCARALVLITYVWFDPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
Canonical Sequence ...
QVQLQESGPGLVKPSQTLSLTCTVSGDSISSDGYYWSWLRQRPGKGLEWIGYIYNSGSTHYNPSLNSRVSISIDTSKTQFSLKLSSVTAADTAVYYCARALVLITYVWFDPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
Protein #2
216 residues (99% resolved)
Raw Sequence ...
NFMLTQPHSVSESPGKTVTISCTGSSGSVASNYVQWYQHRPGSAPTTVIYEDNQRPSGVPDRFSGSIDSSSNSASLTISELKPEDEADYYCQSYGDRNVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Canonical Sequence ...
NFMLTQPHSVSESPGKTVTISCTGSSGSVASNYVQWYQHRPGSAPTTVIYEDNQRPSGVPDRFSGSIDSSSNSASLTISELKPEDEADYYCQSYGDRNVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Protein #3
216 residues (99% resolved)
Raw Sequence ...
RVQPTESIVRFPNITNLCPFHEVFNATTFASVYAWNRKRISNCVADFSVIYNFAPFFAFKCYGVSPTKLNDLCWTNIYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKPSGNYNYLYRLFRKSKLKPFERDISTEIYQAGNKPCNGVAGPNCYSPLQSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKLEVLFQ
Canonical Sequence ...
RVQPTESIVRFPNITNLCPFHEVFNATTFASVYAWNRKRISNCVADFSVIYNFAPFFAFKCYGVSPTKLNDLCWTNIYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKPSGNYNYLYRLFRKSKLKPFERDISTEIYQAGNKPCNGVAGPNCYSPLQSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKLEVLFQ
Non polymer #4
A2G
InChI=1S/C8H15NO6/c1-3(11)9-5-7(13)6(12)4(2-10)15-8(5)14/h4-8,10,12-14H,2H2,1H3,(H,9,11)/t4-,5-,6+,7-,8+/m1/s1
InChI=1S/C8H15NO6/c1-3(11)9-5-7(13)6(12)4(2-10)15-8(5)14/h4-8,10,12-14H,2H2,1H3,(H,9,11)/t4-,5-,6+,7-,8+/m1/s1
SMILES: CC(=O)N[C@@H]1[C@H]([C@H]([C@H](O[C@@H]1O)CO)O)O
CC(=O)N[C@@H]1[C@H]([C@H]([C@H](O[C@@H]1O)CO)O)O
Non polymer #5
CL
InChI=1S/ClH/h1H/p-1
InChI=1S/ClH/h1H/p-1
SMILES: [Cl-]
[Cl-]
Non polymer #6
NAG
InChI=1S/C8H15NO6/c1-3(11)9-5-7(13)6(12)4(2-10)15-8(5)14/h4-8,10,12-14H,2H2,1H3,(H,9,11)/t4-,5-,6-,7-,8-/m1/s1
InChI=1S/C8H15NO6/c1-3(11)9-5-7(13)6(12)4(2-10)15-8(5)14/h4-8,10,12-14H,2H2,1H3,(H,9,11)/t4-,5-,6-,7-,8-/m1/s1
SMILES: CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O)CO)O)O
CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O)CO)O)O
Biounit #1
hetero-1-1-1-1-mer
Download coordinates
Biounit #2
hetero-1-1-1-1-mer
Download coordinates
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Model
Reference
100%