2025-05-03_00000197|hard|9NTO

Structure of Cap9-CdnD complex containing NDG modification; X-ray diffraction 2.15Å
Protein #1 320 residues (88% resolved)

GGSGGSFGSGFDPRDISRQVRDAEKKLGDEAFGAKIADLFTGLLGDYNNRDTSLVRQRIDDMLEGLRDVAEGELDLVFGGSVAKRTYVDGLSDVDCLVIVNDTALEAAGPHAARDLVAKELAAKLAGKAEVSAGKLAVTVRYGDGMEIQLLPAVRTEAGVKIPSARVDGRWSEIDPGKFQQALTKYNKACAGKLVPAVKLAKAVIAQLPDAHQLSGYHIESLAIDAFRNYTGTMTPAAMLPHFFEHAKERVLRPMTDRTGQSVHVDGYMGDAHSDARKTASHLLGRLAKRMANATAARSLPQWEDLFGADEGSSHHHHHH

GGSGGSFGSGFDPRDISRQVRDAEKKLGDEAFGAKIADLFTGLLGDYNNRDTSLVRQRIDDMLEGLRDVAEGELDLVFGGSVAKRTYVDGLSDVDCLVIVNDTALEAAGPHAARDLVAKELAAKLAGKAEVSAGKLAVTVRYGDGMEIQLLPAVRTEAGVKIPSARVDGRWSEIDPGKFQQALTKYNKACAGKLVPAVKLAKAVIAQLPDAHQLSGYHIESLAIDAFRNYTGTMTPAAMLPHFFEHAKERVLRPMTDRTGQSVHVDGYMGDAHSDARKTASHLLGRLAKRMANATAARSLPQWEDLFGADEGSSHHHHHH
Protein #2 191 residues (95% resolved)

MANPTIQTDTAEAAVLLSGGMDSAACAHMLLRKGYRVRGLFIDFGQAAVAPEATAVSTLANILGIAVTTISASAPNRFGSGELVGRNAFLVMSGIFLGGAHSGLIAIGIHAGTPYYDCSPPFLSRMKQVAQEHTSGRLDVVAPLLDWHKPDIYSYFQRSGLPIEATYSCESGTIPPCGSCASCRDRRALGC

MANPTIQTDTAEAAVLLSGGMDSAACAHMLLRKGYRVRGLFIDFGQAAVAPEATAVSTLANILGIAVTTISASAPNRFGSGELVGRNAFLVMSGIFLGGAHSGLIAIGIHAGTPYYDCSPPFLSRMKQVAQEHTSGRLDVVAPLLDWHKPDIYSYFQRSGLPIEATYSCESGTIPPCGSCASCRDRRALGC
Non polymer #3 2KA

InChI=1S/C7H6N4O3/c8-7-10-4-3(5(12)11-7)2(1-9-4)6(13)14/h1H,(H,13,14)(H4,8,9,10,11,12)

c1c(c2c([nH]1)N=C(NC2=O)N)C(=O)O
Non polymer #4 ADN

InChI=1S/C10H13N5O4/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(18)6(17)4(1-16)19-10/h2-4,6-7,10,16-18H,1H2,(H2,11,12,13)/t4-,6-,7-,10-/m1/s1

c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N
Non polymer #5 AMP

InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1

c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N
Non polymer #6 ZN

InChI=1S/Zn/q+2

[Zn+2]
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Reference