2025-05-03_00000196|hard|9NTN

Structure of Cap10-CdnD complex containing NDG modification; X-ray diffraction 2.43Å
Protein #1 332 residues (98% resolved)

MLAKRRGFYLDGNEIIRTPLLLPSFSSKGFPEVQEIIEATSDVIDGPCLISAYDLHYGSIKGPYDFAQAIFIDSGGYEASKDVELSDLGTMPHTPAEWSQDDFSRIIGSWQSPTPTVLVSYDHPKDRLPTRAQIERADAMLPKRPHTFREILFKPERVATGGTSEPPEVTRVNVSAIVDNIGMMARFDALGITEKEVGGNLKERMVNIARIRRALDKVKLTRMPIHVFGSLDTVTTPLYFLAGADVFDGLTWLRFAYYKGMTIYRQNYAAVELGIDMKAHLVDAKCCFDNYRYMKGLEGEMRGFLKEGFASFEHHRPLLERACRAVLEETEV

MLAKRRGFYLDGNEIIRTPLLLPSFSSKGFPEVQEIIEATSDVIDGPCLISAYDLHYGSIKGPYDFAQAIFIDSGGYEASKDVELSDLGTMPHTPAEWSQDDFSRIIGSWQSPTPTVLVSYDHPKDRLPTRAQIERADAMLPKRPHTFREILFKPERVATGGTSEPPEVTRVNVSAIVDNIGMMARFDALGITEKEVGGNLKERMVNIARIRRALDKVKLTRMPIHVFGSLDTVTTPLYFLAGADVFDGLTWLRFAYYKGMTIYRQNYAAVELGIDMKAHLVDAKCCFDNYRYMKGLEGEMRGFLKEGFASFEHHRPLLERACRAVLEETEV
Protein #2 320 residues (95% resolved)

GGSGGSFGSGFDPRDISRQVRDAEKKLGDEAFGAKIADLFTGLLGDYNNRDTSLVRQRIDDMLEGLRDVAEGELDLVFGGSVAKRTYVDGLSDVDCLVIVNDTALEAAGPHAARDLVAKELAAKLAGKAEVSAGKLAVTVRYGDGMEIQLLPAVRTEAGVKIPSARVDGRWSEIDPGKFQQALTKYNKACAGKLVPAVKLAKAVIAQLPDAHQLSGYHIESLAIDAFRNYTGTMTPAAMLPHFFEHAKERVLRPMTDRTGQSVHVDGYMGDAHSDARKTASHLLGRLAKRMANATAARSLPQWEDLFGADEGSSHHHHHH

GGSGGSFGSGFDPRDISRQVRDAEKKLGDEAFGAKIADLFTGLLGDYNNRDTSLVRQRIDDMLEGLRDVAEGELDLVFGGSVAKRTYVDGLSDVDCLVIVNDTALEAAGPHAARDLVAKELAAKLAGKAEVSAGKLAVTVRYGDGMEIQLLPAVRTEAGVKIPSARVDGRWSEIDPGKFQQALTKYNKACAGKLVPAVKLAKAVIAQLPDAHQLSGYHIESLAIDAFRNYTGTMTPAAMLPHFFEHAKERVLRPMTDRTGQSVHVDGYMGDAHSDARKTASHLLGRLAKRMANATAARSLPQWEDLFGADEGSSHHHHHH
Non polymer #3 2KA

InChI=1S/C7H6N4O3/c8-7-10-4-3(5(12)11-7)2(1-9-4)6(13)14/h1H,(H,13,14)(H4,8,9,10,11,12)

c1c(c2c([nH]1)N=C(NC2=O)N)C(=O)O
Non polymer #4 COA

InChI=1S/C21H36N7O16P3S/c1-21(2,16(31)19(32)24-4-3-12(29)23-5-6-48)8-41-47(38,39)44-46(36,37)40-7-11-15(43-45(33,34)35)14(30)20(42-11)28-10-27-13-17(22)25-9-26-18(13)28/h9-11,14-16,20,30-31,48H,3-8H2,1-2H3,(H,23,29)(H,24,32)(H,36,37)(H,38,39)(H2,22,25,26)(H2,33,34,35)/t11-,14-,15-,16+,20-/m1/s1

CC(C)(CO[P@](=O)(O)O[P@@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCS)O
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Reference