2025-03-15_00000124|ligand|8YVR

Crystal structure of GH65 alpha-1,2-glucosidase from Flavobacterium johnsoniae in complex with 1-deoxynojirimycin; X-ray diffraction 1.90Å
Protein #1 678 residues (97% resolved)

MGSSHHHHHHSSGLVPRGSHQDPWKLSADKPDSNNYYGETVANGMIGIISSPEPLKVKEVVLAGTYDIYKRGRVSSFIPNYNLLNMKLAFNGESVQTYNINNYKQELDMRNGAFTGSFQFKDLATVTYSYYALRHLPHCIMMVVNINTQKDTEINVENLLETPSSLNNQQNYFQNITNTHVNIPLLTSVAFTPTGRSKIAVSNTFLFDEGKKLQPEILHRMNDADMHAMSFDKKIKAGKTYSFALIGSLISSDHINDPYNEAERLTIYAALEGKSRLLNRHMQEWNSLWQSDIQVEGDPQAQQDIRSMLYHLYSFTRKSTSLSPSPMGLSGLGYNGHVFWDTEIWMFPPMLLLHPEIAKSMIEYRYQRLDAARKKAAIYGYDGAMFPWESADSGAEETPVNALTGAFEHHVTGDVAIAAWQYYLVTGDKEWLKEKGWPILKATAEFWASRVEKNDKGEYEIKNVVAADEWAENIDNNAYTNGTAIRNLQYASKCATVLGVIAPKEWTLIADKILISKMSNGVTREHDSYTDQNIKQADANLLAYPLKLITDKEQIERDLKYYQTKIPQSDTPAMTQAIFSLLYSRLEDSDQAYHWFKDAYQPNLNPPFRVISECKGGTNPYFSTGAGGVLQAVIMGFGGLDIDAAGGIKQVKSVLPKNWKKLTITGIGIEKKTFVLTH

MGSSHHHHHHSSGLVPRGSHQDPWKLSADKPDSNNYYGETVANGMIGIISSPEPLKVKEVVLAGTYDIYKRGRVSSFIPNYNLLNMKLAFNGESVQTYNINNYKQELDMRNGAFTGSFQFKDLATVTYSYYALRHLPHCIMMVVNINTQKDTEINVENLLETPSSLNNQQNYFQNITNTHVNIPLLTSVAFTPTGRSKIAVSNTFLFDEGKKLQPEILHRMNDADMHAMSFDKKIKAGKTYSFALIGSLISSDHINDPYNEAERLTIYAALEGKSRLLNRHMQEWNSLWQSDIQVEGDPQAQQDIRSMLYHLYSFTRKSTSLSPSPMGLSGLGYNGHVFWDTEIWMFPPMLLLHPEIAKSMIEYRYQRLDAARKKAAIYGYDGAMFPWESADSGAEETPVNALTGAFEHHVTGDVAIAAWQYYLVTGDKEWLKEKGWPILKATAEFWASRVEKNDKGEYEIKNVVAADEWAENIDNNAYTNGTAIRNLQYASKCATVLGVIAPKEWTLIADKILISKMSNGVTREHDSYTDQNIKQADANLLAYPLKLITDKEQIERDLKYYQTKIPQSDTPAMTQAIFSLLYSRLEDSDQAYHWFKDAYQPNLNPPFRVISECKGGTNPYFSTGAGGVLQAVIMGFGGLDIDAAGGIKQVKSVLPKNWKKLTITGIGIEKKTFVLTH
Non polymer #2 EDO

InChI=1S/C2H6O2/c3-1-2-4/h3-4H,1-2H2

C(CO)O
Non polymer #3 NOJ

InChI=1S/C6H13NO4/c8-2-3-5(10)6(11)4(9)1-7-3/h3-11H,1-2H2/t3-,4+,5-,6-/m1/s1

C1[C@@H]([C@H]([C@@H]([C@H](N1)CO)O)O)O
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Reference