2025-03-01_00000226|medium|9ERI

Cryo-EM structure of sodium pumping Rnf complex from Acetobacterium woodii bound to NADH; Electron microscopy 3.30Å
Protein #1 191 residues (100% resolved)

MTLIFIMISAIFVNNFVLSRFLGICPFLGVSKQVETAVGMGVAVTFVMALASAITYVVQYAILDPLSLGYLQTIAFILIIAALVQLVEMIIKKSSPSLYQALGVYLPLITTNCAVLGVALINIQNEYNFIETIFNGVGAALGFTLAIVLFAGIRERLETSAVPKALEGFPIALLTAGLMAIAFLGFSGMKL

MTLIFIMISAIFVNNFVLSRFLGICPFLGVSKQVETAVGMGVAVTFVMALASAITYVVQYAILDPLSLGYLQTIAFILIIAALVQLVEMIIKKSSPSLYQALGVYLPLITTNCAVLGVALINIQNEYNFIETIFNGVGAALGFTLAIVLFAGIRERLETSAVPKALEGFPIALLTAGLMAIAFLGFSGMKL
Protein #2 333 residues (100% resolved)

MLNAILVPVGILGVFGLIFGIGLAIAAKVFEVYEDPRVPLVRAALPGANCGGCGLPGCDALAANIVGGSAAIDACPVGGASCAAAVAEIMGMEAGSAVKKVATVICQGTCETAPNRAEYYGEMDCREAMIASGGSKGCRYGCLGYGTCKAVCPFDAIVIGEDGLPKVDPEKCTSCGKCVEACPKSIMTLVPEAQEVIVKCHNFDKGKIARLSCTTACIACGACVKACRFDAITVENNCAKIDYDKCRQCYECVDKCPMNCISGDVEYGKSTAYIIEENCIACGLCAKNCPVNAITGEIKKPPYVIDHDMCIGCGICFDKCRKSAIEMRPNKTK

MLNAILVPVGILGVFGLIFGIGLAIAAKVFEVYEDPRVPLVRAALPGANCGGCGLPGCDALAANIVGGSAAIDACPVGGASCAAAVAEIMGMEAGSAVKKVATVICQGTCETAPNRAEYYGEMDCREAMIASGGSKGCRYGCLGYGTCKAVCPFDAIVIGEDGLPKVDPEKCTSCGKCVEACPKSIMTLVPEAQEVIVKCHNFDKGKIARLSCTTACIACGACVKACRFDAITVENNCAKIDYDKCRQCYECVDKCPMNCISGDVEYGKSTAYIIEENCIACGLCAKNCPVNAITGEIKKPPYVIDHDMCIGCGICFDKCRKSAIEMRPNKTK
Protein #3 443 residues (100% resolved)

MNVKHGTFKGGIHPPYRKESTAEVPLGFGKKPEMVIIPMSLHIGAPCTPIVKKGDTVFLGQRVGEPNGFVSVPVHASVSGKVIAVEERPHASGDRVMSVVIESDGLDTIDPSIKPYGTLEDMDADAIKKMVLNAGIVGLGGATFPTHVKLAIPPDKKVDCVVLNGAECEPYLTADHHLMTSQAEKVVMGLKLAMKSVGVEKGFIGVEDNKTDAIEALVKAIGNDSRLEVYSLHTKYPQGAEKQLIAAITGREVPSGALPADAGVVVMNVGTAAQIAESMITGLPLYKRYLTCTGDAIKNPQTIEIRIGVPFQSVIDQCGGFSSEPGKVISGGPMMGVTQFVTDIPVMKGTSGILCLTKESAKIATPSNCIHCGKCVGVCPIHLQPLNIAEYSQRNMWDKCESNNAMDCIECGSCSYICPAKRTLVSSIRVAKREIIAQRRKGN

MNVKHGTFKGGIHPPYRKESTAEVPLGFGKKPEMVIIPMSLHIGAPCTPIVKKGDTVFLGQRVGEPNGFVSVPVHASVSGKVIAVEERPHASGDRVMSVVIESDGLDTIDPSIKPYGTLEDMDADAIKKMVLNAGIVGLGGATFPTHVKLAIPPDKKVDCVVLNGAECEPYLTADHHLMTSQAEKVVMGLKLAMKSVGVEKGFIGVEDNKTDAIEALVKAIGNDSRLEVYSLHTKYPQGAEKQLIAAITGREVPSGALPADAGVVVMNVGTAAQIAESMITGLPLYKRYLTCTGDAIKNPQTIEIRIGVPFQSVIDQCGGFSSEPGKVISGGPMMGVTQFVTDIPVMKGTSGILCLTKESAKIATPSNCIHCGKCVGVCPIHLQPLNIAEYSQRNMWDKCESNNAMDCIECGSCSYICPAKRTLVSSIRVAKREIIAQRRKGN
Protein #4 318 residues (100% resolved)

MNELNLTVSSSPHIRAKHSTASIMQNVIIALLPALAVAGYVFGLWALALVAICVISSVATEAVIQKLLKKPITVNDWSAVVTGVLLAFNLPINAPWWIGVVGSVFAIAIVKQCFGGLGQNFINPALAARAFLLASWPGHMTSTAYIPLTDTVTTATPLALLKAGETGSMPSTLDLFTGLNGVYGCIGEISALALLIGGLYLIYKGIISWRIPTIYLLTIAIFALLVGQDPIVHMVSGGVMLGAFFMATDYASSPVTAKGQIIYAIGCGLITMIIRLYGGYPEGCSYSILLMNVATPLIERFTKERIYGVTKIKKEAKA

MNELNLTVSSSPHIRAKHSTASIMQNVIIALLPALAVAGYVFGLWALALVAICVISSVATEAVIQKLLKKPITVNDWSAVVTGVLLAFNLPINAPWWIGVVGSVFAIAIVKQCFGGLGQNFINPALAARAFLLASWPGHMTSTAYIPLTDTVTTATPLALLKAGETGSMPSTLDLFTGLNGVYGCIGEISALALLIGGLYLIYKGIISWRIPTIYLLTIAIFALLVGQDPIVHMVSGGVMLGAFFMATDYASSPVTAKGQIIYAIGCGLITMIIRLYGGYPEGCSYSILLMNVATPLIERFTKERIYGVTKIKKEAKA
Protein #5 196 residues (100% resolved)

MNFMKNLTRGIIRENPTFVLVLGMCPTLAVTTSAINGMGMGLATMLVLIGSNVAISALRKVIPDNIRIPAFVVVIASFVTIVGMLMKAYVPALDAALGIFIPLIVVNCIILARAEAFAFSNGIADSFADAVGMGLGFTLALTILGSIREILGAGSIFGFSLFGAAYEPVLLMILPPGAFLTLGLLIGLINWKTKKA

MNFMKNLTRGIIRENPTFVLVLGMCPTLAVTTSAINGMGMGLATMLVLIGSNVAISALRKVIPDNIRIPAFVVVIASFVTIVGMLMKAYVPALDAALGIFIPLIVVNCIILARAEAFAFSNGIADSFADAVGMGLGFTLALTILGSIREILGAGSIFGFSLFGAAYEPVLLMILPPGAFLTLGLLIGLINWKTKKA
Protein #6 207 residues (100% resolved)

METKEKVQIDWKVVFKLGLILFVISAVAACALALTNYVTAGTIEEMNVQTNTVARQEVLPKAADFEAVPAKDVEKIASEIGMEKPEELLEVYIGKSNGEVVGYTVKTGPTSGYAGEVQVLTGISADGVITGITIIKSNETPGLGAKASGVWNDQFTGKSAKEELVVVKGTTKEGSNEIQAITGSTITSKAVTSGVNMSIQVYQNLSK

METKEKVQIDWKVVFKLGLILFVISAVAACALALTNYVTAGTIEEMNVQTNTVARQEVLPKAADFEAVPAKDVEKIASEIGMEKPEELLEVYIGKSNGEVVGYTVKTGPTSGYAGEVQVLTGISADGVITGITIIKSNETPGLGAKASGVWNDQFTGKSAKEELVVVKGTTKEGSNEIQAITGSTITSKAVTSGVNMSIQVYQNLSK
Non polymer #7 FES

InChI=1S/2Fe.2S

S1[Fe]S[Fe]1
Non polymer #8 FMN

InChI=1S/C17H21N4O9P/c1-7-3-9-10(4-8(7)2)21(15-13(18-9)16(25)20-17(26)19-15)5-11(22)14(24)12(23)6-30-31(27,28)29/h3-4,11-12,14,22-24H,5-6H2,1-2H3,(H,20,25,26)(H2,27,28,29)/t11-,12+,14-/m0/s1

Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)C[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O
Non polymer #9 NAD

InChI=1S/C21H27N7O14P2/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(32)14(30)11(41-21)6-39-44(36,37)42-43(34,35)38-5-10-13(29)15(31)20(40-10)27-3-1-2-9(4-27)18(23)33/h1-4,7-8,10-11,13-16,20-21,29-32H,5-6H2,(H5-,22,23,24,25,33,34,35,36,37)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1

c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)([O-])O[P@@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)N
Non polymer #10 RBF

InChI=1S/C17H20N4O6/c1-7-3-9-10(4-8(7)2)21(5-11(23)14(25)12(24)6-22)15-13(18-9)16(26)20-17(27)19-15/h3-4,11-12,14,22-25H,5-6H2,1-2H3,(H,20,26,27)/t11-,12+,14-/m0/s1

Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=N2)C[C@@H]([C@@H]([C@@H](CO)O)O)O
Non polymer #11 SF4

InChI=1S/4Fe.4S

[S]12[Fe]3[S]4[Fe]1[S]5[Fe]2[S]3[Fe]45
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Reference